YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28926826, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVISKEEEA AHYREVVKGG LIGGTGGLIV GLGGVMLGMK RYQFVRQLSL PFRAFLVTSA  60
   61 GTFGAIILAE QYSVTFQRAK DPMLNYIEAG KKKHEQERLA NVTSTQRFME WGRENRYSIV 120
  121 FASWIAAMGA AMAIVNRNKY LSASQKLVQA RVYAQGLTLA VLIATAAFET ADAKSGKGRW 180
  181 ETVMVVDPND PTHQHLIEKK VKKEDYEGQN LWQDMVAAEE KRLAHKKAQE KQQQEKASAS 240
  241 A

Type	Start	End	Confidence
Cytoplasmic	1	18	0.72
Transmembrane Helix	19	39	0.92
Non-Cytoplasmic	40	49	0.69
Transmembrane Helix	50	74	0.80
Cytoplasmic	75	116	0.76
Transmembrane Helix	117	135	0.95
Non-Cytoplasmic	136	151	0.70
Transmembrane Helix	152	171	0.57
Cytoplasmic	172	241	0.63