YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126170062, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.86
Transmembrane Helix	7	33	0.85
Non-Cytoplasmic	34	53	0.89
Transmembrane Helix	54	75	0.91
Cytoplasmic	76	85	0.81
Transmembrane Helix	86	107	0.92
Non-Cytoplasmic	108	112	0.77
Transmembrane Helix	113	131	0.92
Cytoplasmic	132	138	0.82
Transmembrane Helix	139	162	0.91
Non-Cytoplasmic	163	169	0.90
Transmembrane Helix	170	193	0.93
Cytoplasmic	194	213	0.93
Transmembrane Helix	214	234	0.91
Non-Cytoplasmic	235	239	0.77
Transmembrane Helix	240	257	0.95
Cytoplasmic	258	273	0.83
Transmembrane Helix	274	293	0.94
Non-Cytoplasmic	294	307	0.79
Transmembrane Helix	308	327	0.89
Cytoplasmic	328	334	0.71
Transmembrane Helix	335	357	0.84
Non-Cytoplasmic	358	368	0.68
Transmembrane Helix	369	389	0.84
Cytoplasmic	390	398	0.66
Transmembrane Helix	399	420	0.90
Non-Cytoplasmic	421	427	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTILFLFLLL FLLMFIGVPI AVSLGLSGAL TILLFSPDSV RSLAIKLFET SEHYTLLAIP  60
   61 FFLLSGAFMT TGGVARRLID FANACVGHIR GGLAIAAVLA CMLFAALSGS SPATVAAVGS 120
  121 IAIAGMVRSG YPQAFGAGIV CNAGTLGILI PPSIVMVVYA AATETSVGKL FIAGVVPGLL 180
  181 LGLILMVVIY IVARVKKLPA MPRVSLREWL ASARKALWGL LLMVIILGGI YSGAFTPTEA 240
  241 AAVAAVYSAF VALFVYRDMR LSECPKVLLE SGKLTIMLMF IIANAMLFAH VLTTEQIPQS 300
  301 IASWVTELGL SPWMFLLVVN IVLLIAGNFM EPSAIILILA PIFFPIAMEL GIDPIHLGII 360
  361 MVVNMEIGLI TPPVGLNLFV TSAVTGMPLG ATIRAALPWL MILLVFLIIV TYIPAVSLAL 420
  421 PNWLGMS