YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7444163, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADTNINDR LEIVMQDNLS ILSLISSADI IGKSVMLMLL FASIWSWSII LHKIFRLAQV  60
   61 QRRIQSFENV FWSGCVLEQL YESIKKSVNN PLALIFVSAM NECNSLNTKG FSEALKNNHK 120
  121 ERIMSAMYLA QNREIEKLEQ NLNVLATIGS SAPFIGLFGT VWGIMHSFQS IASSKNTSLA 180
  181 VVAPGIAEAL LATAIGLFVA IPAVIFYNYL ISRITLINNK IEDFISELNS ILSKAIDQEK 240
  241 M

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.87
Transmembrane Helix	30	55	0.79
Cytoplasmic	56	141	0.97
Transmembrane Helix	142	164	0.91
Non-Cytoplasmic	165	188	0.84
Transmembrane Helix	189	211	0.91
Cytoplasmic	212	241	0.97