YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15794934, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.51
Transmembrane Helix	26	47	0.86
Cytoplasmic	48	54	0.51
Transmembrane Helix	55	81	0.83
Non-Cytoplasmic	82	103	0.59
Transmembrane Helix	104	124	0.93
Cytoplasmic	125	139	0.82
Transmembrane Helix	140	163	0.83
Non-Cytoplasmic	164	173	0.84
Transmembrane Helix	174	195	0.88
Cytoplasmic	196	200	0.80
Transmembrane Helix	201	224	0.86
Non-Cytoplasmic	225	241	0.90
Transmembrane Helix	242	267	0.81
Cytoplasmic	268	286	0.90
Transmembrane Helix	287	307	0.78
Non-Cytoplasmic	308	317	0.64
Transmembrane Helix	318	339	0.85
Cytoplasmic	340	345	0.63
Transmembrane Helix	346	364	0.74
Non-Cytoplasmic	365	383	0.79
Transmembrane Helix	384	407	0.84
Cytoplasmic	408	416	0.79
Transmembrane Helix	417	435	0.86
Non-Cytoplasmic	436	436	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSKQTLLD GIFKLKANGT TVRTELMAGL TTFLTMCYIV IVNPLILGET GMDMGAVFVA  60
   61 TCIASAIGCF VMGFVGNYPI ALAPGMGLNA YFTFAVVKGM GVPWQVALGA VFISGLIFIL 120
  121 FSFFKVREML VNALPMGLKM SIAAGIGLFL ALISLKGAGI IVANPATLVG LGDIHQPSAL 180
  181 LALFGFAMVV VLGHFRVQGA IIITILTITV IASLMGLNEF HGIIGEVPSI APTFMQMDFK 240
  241 GLFTVSMVSV IFVFFLVDLF DSTGTLVGVS HRAGLLVDGK LPRLKRALLA DSTAIVAGAA 300
  301 LGTSSTTPYV ESAAGVSAGG RTGLTAVTVG VLMLACLMFS PLAKSVPAFA TAPALLYVGT 360
  361 QMLRSARDID WDDMTEAAPA FLTIVFMPFT YSIADGIAFG FISYAVVKLL CRRTKDVPPM 420
  421 VWIVAVLWAL KFWYLG