YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15807911, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.99
Transmembrane Helix	34	54	0.92
Non-Cytoplasmic	55	68	0.82
Transmembrane Helix	69	89	0.92
Cytoplasmic	90	99	0.84
Transmembrane Helix	100	122	0.90
Non-Cytoplasmic	123	134	0.90
Transmembrane Helix	135	157	0.92
Cytoplasmic	158	167	0.89
Transmembrane Helix	168	190	0.92
Non-Cytoplasmic	191	197	0.82
Transmembrane Helix	198	216	0.95
Cytoplasmic	217	230	0.82
Transmembrane Helix	231	251	0.94
Non-Cytoplasmic	252	258	0.75
Transmembrane Helix	259	279	0.94
Cytoplasmic	280	297	0.78
Transmembrane Helix	298	319	0.88
Non-Cytoplasmic	320	332	0.70
Transmembrane Helix	333	356	0.79
Cytoplasmic	357	363	0.82
Transmembrane Helix	364	383	0.93
Non-Cytoplasmic	384	392	0.82
Transmembrane Helix	393	414	0.82
Cytoplasmic	415	431	0.76
Transmembrane Helix	432	451	0.66
Non-Cytoplasmic	452	656	0.60
Transmembrane Helix	657	677	0.90
Cytoplasmic	678	698	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNPASPPLQ SSPAPVPVPD HETMPHFTDQ EKRITLIGLL VVFLLAALSQ NVVGTAMPRI  60
   61 IEDLKGFNLY TWVTTAYLLA STVMVPIYGK LSDLYGRKPI LIFGILVFLF GSALCGLAGE 120
  121 PFLGNFLGGG MNQLIAFRAV AGFGGAALFT TAFTILADMF DPTERAKFGG LFGAIFGLSM 180
  181 VLGPLIGGWL TDTLSWRWTF YANLPLGILA LFLIISKMPK LAHRMQGKID YWGAALILAT 240
  241 TIPLLLALTW GGTTYAWNSS TIISLFAGSL VSLIAFLFVE RRTPDAIIPL TLFNVPMFSI 300
  301 GNLASFVMGM AFFGVVMFLP LYMQMVLGVS PTASGTSMLP LMLGLMLSSI TSGNIVARTG 360
  361 KYKPWMIGGA LILILGMWTL TGIRSDSHLV DLYWRMFIVG LGLGPSQSLF TLAIQSAVPL 420
  421 RQLGVATSSS QFFRQIGSTI GAAIFGTLLM NNLHNELPKH LPAMPGSSMN SKNIDLGTLR 480
  481 AASTGKGNGP EVQIKKAFDQ QYVLIEKAIN GDEAARRAVQ ANKQLPNELK VLATGGLNAK 540
  541 VHAGVIRQAA GVQAALAKGE KGRQAILRNP NRPEQLKAIV RGLPAQALAT PQAAQVTAAR 600
  601 VAQGILASEP QVQAQARTQA LATIKQQFDT QAKTLGKQVG QGLKDGFTAS MTKMFRSAIW 660
  661 FALAGFLITL FVPVVPLRTR NKPAGPSKTE GEGAVPVA