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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25391003
Protein type: Transmembrane
Type Confidence: 0.57
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLARSGKVSM ATKKRSGEEI NDRQILCGMG IKLRRLTAGI CLITQLVFPM AAAAQGVVNA  60
   61 ATQQPVPAQI AIANANTVPY TLGALESAQS VAERFGISVA ELRKLNQFRT FARGFDNVRQ 120
  121 GDELDVPAQV SENNLTPPPG NSSGNLEQQI ASTSQQIGSL LAEDMNSEQA ANMARGWASS 180
  181 QASGAMTDWL SRFGTARITL GVDEDFSLKN SQFDFLHPWY ETPDNLFFSQ HTLHRTDERT 240
  241 QINNGLGWRH FTPTWMSGIN FFFDHDLSRY HSRAGIGAEY WRDYLKLSSN GYLRLTNWRS 300
  301 APELDNDYEA RPANGWDVRA EGWLPAWPHL GGKLVYEQYY GDEVALFDKD DRQSNPHAIT 360
  361 AGLNYTPFPL MTFSAEQRQG KQGENDTRFA VDFTWQPGSA MQKQLDPNEV DARRSLAGSR 420
  421 FDLVDRNNNI VLEYRKKELV RLTLTDPVTG KSGEVKSLVS SLQTKYALKG YNVEATALEA 480
  481 AGGKVVTTGK DILVTLPAYR FTSTPETDNT WPIEVTAEDV KGNFSNREQS MVVVQAPTLS 540
  541 QKDSSVSLSS QTLSADSHST ATLTFIAHDA AGNPVIGLVL STRHEGVQDI TLSDWKDNGD 600
  601 GSYTQILTTG AMSGTLTLMP QLNGVDAAKA PAVVNIISVS SSRTHSSIKI DKDRYLSGNP 660
  661 IEVTVELRDE NDKPVKEQKQ QLNTAVSIDN VKPGVTTDWK ETADGVYKAT YTAYTKGSGL 720
  721 TAKLLMQNWN EDLHTAGFII DANPQSAKIA TLSASNNGVL ANENAANTVS VNVADEGSNP 780
  781 INDHTVTFAV LSGSATSFNN QNTAKTDVNG LATFDLKSSK QEDNTVEVTL ENGVKQTLIV 840
  841 SFVGDSSTAQ VDLQKSKNEV VADGNDSATM TATVRDAKGN LLNDVKVTFN VNSAAAKLSQ 900
  901 TEVNSHDGIA TATLTSLKNG DYTVTASVSS GSQANQQVIF IGDQSTAALT LSVPSGDITV 960
  961 TNTAPLHMTA TLQDKNGNPL KDKEITFSVP NDVASRFSIS NSGKGMTDSN GTAIASLTGT1020
 1021 LAGTHMITAR LANSNVSDTQ PMTFVADKDR AVVVLQTSKA EIIGNGVDET TLTATVKDPF1080
 1081 DNVVKNLSVV FRTSPADTQL SLNARNTNEN GIAEVTLKGT VLGVHTAEAI LLNGNRDTKI1140
 1141 VNIAPDASNA QVTLNIPAQQ VVTNNSDSVQ LTATVKDPSN HPVAGITVNF TMPQDVAANF1200
 1201 TLENNGIAIT QANGEAHVTL KGKKAGTHTV TATLGNNNAS DAQPVTFVAD KDSAVVVLQT1260
 1261 SKAEIIGNGV DETTLTATVK DPFDNAVKDL QVTFSTNPAD TQLSQSKSNT NDSGVAEVTF1320
 1321 KGTGFGCSYS RSHTA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle