YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP6_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYSPLDQFE IKPLLMVNNI LTLALTNYTL YLIIVVSIIF GYTSIISNGR LGSTRWGVAI  60
   61 IAIYDTILNL VYSQIGKAGG HFFPLIFTIF NLIFAANLIS MIPYSFAISA QLVAIVSFSL 120
  121 ALWIGNVILG LYLHGWGFFA LFVPSGTPLP LVPILVLIEA LSYSSRAISL GLRLGANILS 180
  181 GHLLMLILGS LIVNLMSSSI LGFIGGIVPI VAVIAITILE VGIAIIQAYV FSILLSGYIK 240
  241 DSVSLH

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.77
Transmembrane Helix	21	45	0.85
Cytoplasmic	46	52	0.69
Transmembrane Helix	53	73	0.76
Non-Cytoplasmic	74	80	0.70
Transmembrane Helix	81	101	0.90
Cytoplasmic	102	111	0.60
Transmembrane Helix	112	133	0.87
Non-Cytoplasmic	134	139	0.61
Transmembrane Helix	140	161	0.84
Cytoplasmic	162	177	0.66
Transmembrane Helix	178	204	0.76
Non-Cytoplasmic	205	206	0.48
Transmembrane Helix	207	231	0.83
Cytoplasmic	232	246	0.77