YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VN1R4_PONPY
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRYVAVGM MLSQTVVGVL GSFSLLLHYL SLHYIGCRLR SADLIVKHLI AASFLTLLCK  60
   61 GVPQTMAAFR VRYFLNAIGC KLVFYLHRVG RGVSTGTTCL LSVFQVITVS SRKSRWAKLK 120
  121 EKAPKHVGFS VLLCWILCML VNIIFPIYVT GKRNHTNITV NKDLGDCCGR GNNKIAQTLR 180
  181 AMLLSFPDVL CLGFMLWASS SMVCILHRHK QRVQHIHRSN LSPRASPENR ATQSILIPVS 240
  241 TFVSSYTLSC LLQVCMALLD NPNSLLVNTS ALMSACFPTL SPFVLMSCDP SVYRLCFAWK 300
  301 R

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.66
Transmembrane Helix	10	32	0.85
Cytoplasmic	33	43	0.64
Transmembrane Helix	44	67	0.74
Non-Cytoplasmic	68	88	0.75
Transmembrane Helix	89	109	0.82
Cytoplasmic	110	126	0.91
Transmembrane Helix	127	149	0.91
Non-Cytoplasmic	150	185	0.95
Transmembrane Helix	186	207	0.89
Cytoplasmic	208	233	0.93
Transmembrane Helix	234	257	0.82
Non-Cytoplasmic	258	268	0.72
Transmembrane Helix	269	288	0.79
Cytoplasmic	289	301	0.73