YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12720656, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIQISNDR KIVRHKLPAR LSHWLLVICF FITGLSGLAF FFPDFSWLTE ILGTPQLARF  60
   61 VHPFTGIVMF VAFLNLCRIY WRHNFPEKND WVWLKNIGEV LKGNEHAVSD NGKYNLGQKM 120
  121 LFWTLILAMI TLLVTGIIMW RQYFSHNFSI PVIRIAILLH STSAFLLFTG IMVHIYMAFW 180
  181 VKGSIRGMVE GWVTVRWAKK HHPRWYREEV LPELEKEELA KQQNQSQP

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	42	0.97
Non-Cytoplasmic	43	59	0.91
Transmembrane Helix	60	81	0.90
Cytoplasmic	82	120	0.98
Transmembrane Helix	121	140	0.96
Non-Cytoplasmic	141	155	0.82
Transmembrane Helix	156	178	0.91
Cytoplasmic	179	228	0.97