YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12720708, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	379	0.99
Transmembrane Helix	380	401	0.91
Cytoplasmic	402	414	0.89
Transmembrane Helix	415	435	0.94
Non-Cytoplasmic	436	442	0.84
Transmembrane Helix	443	464	0.91
Cytoplasmic	465	479	0.91
Transmembrane Helix	480	501	0.90
Non-Cytoplasmic	502	521	0.92
Transmembrane Helix	522	545	0.90
Cytoplasmic	546	555	0.82
Transmembrane Helix	556	576	0.89
Non-Cytoplasmic	577	607	0.90
Transmembrane Helix	608	626	0.95
Cytoplasmic	627	634	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYVNQLRYL VLIFSVFFCT FTQAKDNYAE WIQDIEHRLD KTVHLYQQGQ ADEARTEVQM  60
   61 AYFEVFENLE GPIRINFSAQ KSYQMEATFA EIRKMIGEGV SLEAIQTKIN GLKSELQEVL 120
  121 PVLADGHQLN ASAQHDVYSN QTIAQHWQQS FKIIDDLLAQ AISAYEQGEF AQAKKWVQQA 180
  181 QYDGFKNAEM EMAIRQNRSA SISASINQQF YDLIRLSEKP DQLNNLGYQI TLLLQEIEEQ 240
  241 LPNLPTTRET QVVQAQVNST DNTPDQDWQK VTNEINQRIQ QAMNLYQQGE QKKAMLAVQD 300
  301 TYFDVFESSG MENKIGARDS NMKAELEGYF TRLVSLIKAN ASSDQLQQQA NQLAQGLSKS 360
  361 VEMLQGGKQS HWSMFLYSLL IILREGLEAL LIVAAIVTYL IKNQHQDKLP VIRQSVYVAL 420
  421 IASLITAVIF QFVFANAGAS RELLEGFTMM IAVVMLFMMS YWLLSKVEAQ NWQRYLEGKL 480
  481 SSALTTGSLI GLWLTSFLAV YREGAETVLF YYALVADATS AVSYLYLFAG LVVGIVILTV 540
  541 CYLIMRYTVV KLPLKPFFMF TGTFMYLMAF VFAGKSVLEL IEGKLFEPTL IVGAPEISWL 600
  601 GIYPYLETLI PQVILLIAAL FALFYMKYQN RKAV