YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15603783, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.66
Transmembrane Helix	17	39	0.88
Cytoplasmic	40	49	0.64
Transmembrane Helix	50	70	0.92
Non-Cytoplasmic	71	93	0.69
Transmembrane Helix	94	117	0.74
Cytoplasmic	118	135	0.65
Transmembrane Helix	136	156	0.77
Non-Cytoplasmic	157	166	0.79
Transmembrane Helix	167	190	0.89
Cytoplasmic	191	235	0.95
Transmembrane Helix	236	256	0.91
Non-Cytoplasmic	257	265	0.84
Transmembrane Helix	266	287	0.91
Cytoplasmic	288	296	0.86
Transmembrane Helix	297	317	0.93
Non-Cytoplasmic	318	337	0.88
Transmembrane Helix	338	356	0.92
Cytoplasmic	357	364	0.70
Transmembrane Helix	365	387	0.88
Non-Cytoplasmic	388	419	0.89
Transmembrane Helix	420	439	0.94
Cytoplasmic	440	443	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYLEFLFLL VALYLGSRFG GIGLGVVSGI GLLIEVFIFR MPPTSPPIEV MLIILAVVTC  60
   61 ASILEAAGGL KFMLQIAERV LRSNPKRVTI LGPLVTYTMT FMLGTGHAVY SIMPIIGDVA 120
  121 LKNKIRPERP MAAASVASQL AITSSPISAA VVYYLAQIVA LPGFEHVTLL SIISVTVPAT 180
  181 LIGTIALSLY SLRRGKELEA DPEYQRRLED PVWRDRILNT TSTSLNETLP PAARHAVYLF 240
  241 LLALITIVII AMFPEIRTIG EAKKPISMSL IIQMMMLGFG GIILLVTKTN VQTVPNGVVF 300
  301 KSGMVAAIAI FGIAWMSDTY FQYAMPSFKA GITEMVQTYP WTFAFALFAV SVVINSQAAT 360
  361 ARMLLPVGIA MGLPAPLLIG LMPATYGYFF IPNYPSDIAT VNFDVTGTTK IGKYYFNHSF 420
  421 MVPGLIGVVT ACCVGYTLAQ ILI