YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44980930
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.91
Transmembrane Helix	12	35	0.92
Cytoplasmic	36	53	0.88
Transmembrane Helix	54	71	0.87
Non-Cytoplasmic	72	89	0.84
Transmembrane Helix	90	108	0.93
Cytoplasmic	109	132	0.92
Transmembrane Helix	133	155	0.90
Non-Cytoplasmic	156	163	0.77
Transmembrane Helix	164	185	0.93
Cytoplasmic	186	194	0.76
Transmembrane Helix	195	213	0.95
Non-Cytoplasmic	214	253	0.96
Transmembrane Helix	254	276	0.89
Cytoplasmic	277	290	0.83
Transmembrane Helix	291	316	0.86
Non-Cytoplasmic	317	352	0.87
Transmembrane Helix	353	379	0.79
Cytoplasmic	380	397	0.91
Transmembrane Helix	398	422	0.87
Non-Cytoplasmic	423	428	0.75
Transmembrane Helix	429	450	0.92
Cytoplasmic	451	457	0.79
Transmembrane Helix	458	477	0.92
Non-Cytoplasmic	478	495	0.82
Transmembrane Helix	496	518	0.88
Cytoplasmic	519	597	0.98
Transmembrane Helix	598	618	0.92
Non-Cytoplasmic	619	629	0.85
Transmembrane Helix	630	654	0.86
Cytoplasmic	655	686	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHLNPPLSQ GVGYAIVVGL GAVFAIGMVM TTYIFERYQR EVITAEEFAT ARRTVKTGLI  60
   61 ASAVVSSWTW QPRYCQSTTM AYKVGVSGPF YYAAGACVQI ILFSTLAIKC KQRAPNAHTF 120
  121 LEIIKARYGR KAHILHMCYA LVTNVLVTTM LLTGGSAVVS ELTGMHTAAA CFLLPVGVII 180
  181 YTLFGGIKAT FLTDYVHTVI IVGIILTFTF SVYRTSDMLG SASKVYDLLR EAARQHPVKG 240
  241 NRNGEYLTMK SESGGIFFVV SLVGNFGTVL LDNGYFTKAF SSSPAAALPG YVVGGIVWFA 300
  301 IPCLVATSLG LACLALELLP SFPNYPSRLS QEQVDAGLVL PVAAFNLLGK GGAMAALLMV 360
  361 FMAVTSAMSA ELIAVSTIFT YDIYRGYVNP DAPGKRLIVT SHAACVVFGV AMSAVSVGLY 420
  421 YAGISLGYLY EVMGIIISSA VIPSALTLFW SKQNIYAVTI APLVGTTLAV TSWLVCAKVL 480
  481 YGSITVENTY KDYPMLTGNL VALLSPALLI PLLTYSLGAD SYDWIAMKTD ILRVDETDEL 540
  541 LDADKGLAMV VTRELFESSS VPSAIEKEEI NHTTEPNLQR EMTNGLEEER ILKRASRLAT 600
  601 ILCAIFILSF LVLWPVPMYG TGYIFSKGFF TGWVSVLTLW LFCTGFAVCI YPLWEGRHGL 660
  661 FTTVRGIYWD CTGQKAKLRD WQCSQI