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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|44984753, gi|...
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGMKYRYDV PAEKRSWRDT MQHNEKLYRK SSSFDADSLL RSQATSQEEV TEKEETVERT  60
   61 EVDVKTVIAS EKVTEQMGAV RERPLISTEV LDVPSQRALA FSLFLIIQTY KLYDLVLLKS 120
  121 GLPVSGVLLT NSKFNFISKY AIVDSLFLYF LPSFKIPKLR FRPIVTFLQI LLAVALTILL 180
  181 SNDTNIPLIS LLVSAWGRYN TKELSLTGAS VNHRKIMDTS SHFKGAHTIK ILPENTVMFN 240
  241 PFHESFCLPM EMAITDLKVP IRINSTSEIS FLQLEHHDIY TNEIQLLNFT RKELSKMNVK 300
  301 SEPDPQILYL QVPLERVGFY QLKKIVDTNN FGLRIYKPQV IVSHCPMATV GGIGSKDKCI 360
  361 GDQDTVTIQV TGVPPMKLKY TKTINNEDFN FVDSSLQPEY FESPLLSNKK TFSRADIADL 420
  421 KWARTYPVDI TLESFINSDG VYSYAIDEVV DGLGNVMDFK ALSPEVLEKY ELEHTFHAHD 480
  481 LPRASLDEKI NPNSGTKRSL LLHVESSSAQ QDVPYLAAIN YEHNNERSTL EYEFTDQNAE 540
  541 IFIENPGAYT LTSIRSKYCS GAILGKSTIV VTKPIPPQLS VKSTPILDQC IGQVGLNFDL 600
  601 TFTGVPPFYY TAKIYKQENG QLRLHEKKDF KSQGTRNQYS YNPTTEGHYE IVFDAISNTL 660
  661 FKDPIPLLPA SDYTFNTSMR VKANAVINTK YDSTLCLGDR SKIPVKFTGE PPFNLDYDIV 720
  721 ETSSNKRISY HLEKVTSYHY DIQTPPFNVG GDYILSLISV KDSSGCLVPL SGNDARINVR 780
  781 RDIPTAAFSL ANSTTNELKI KEGSTAFLPL RLSGEQPFTV RYQHISKDGT ASGTYESKFQ 840
  841 SNYRPVLKVN QEGSYRLLSM KDHSCDGNVE SELMPKVSFF EKPTFSVVEH NKIAKLNSFN 900
  901 FAKEPVCQGF EETVDLSLVG SAPFTVMYEL TSPNGQITSK SIQVATKYAS LKLPNDHQGE 960
  961 YILTVKAVYD SYYTQHDLQG KPLRSAEVTI RQTVNPLPTV RFADRGKTYR TCSANVDQPY1020
 1021 LLDAIPLHIS GGKGPYSISF SIYHESTSKT DFLTLDNVTL DSFDYTQLYH GLKLGNHIVS1080
 1081 IEKVVDKNGC INDAIMENNH VLISITDVPK IVLMDPTMEY CVGDYVSYQL NGVAPFLIKY1140
 1141 EFNGVQLRSK EQTSQFVRFA SEPGMISINS IQDSSSHCVI DFSNPALKAE FERLSLLVHP1200
 1201 IPSVTVSQGD NVIEDIHEGD QAEVIFTFEG TPPFSLTYVR TEEVDGRKGR RPQIVETHKV1260
 1261 TDIYSYEYRV STSLQGTYEA IEVADAFCSA KNDAFFNNY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle