YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44984758
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.99
Transmembrane Helix	92	114	0.90
Non-Cytoplasmic	115	126	0.70
Transmembrane Helix	127	153	0.83
Cytoplasmic	154	171	0.82
Transmembrane Helix	172	194	0.85
Non-Cytoplasmic	195	201	0.86
Transmembrane Helix	202	220	0.96
Cytoplasmic	221	229	0.79
Transmembrane Helix	230	252	0.90
Non-Cytoplasmic	253	280	0.93
Transmembrane Helix	281	303	0.89
Cytoplasmic	304	319	0.95
Transmembrane Helix	320	340	0.93
Non-Cytoplasmic	341	367	0.95
Transmembrane Helix	368	392	0.83
Cytoplasmic	393	419	0.93
Transmembrane Helix	420	439	0.96
Non-Cytoplasmic	440	447	0.81
Transmembrane Helix	448	469	0.91
Cytoplasmic	470	489	0.90
Transmembrane Helix	490	513	0.91
Non-Cytoplasmic	514	531	0.90
Transmembrane Helix	532	552	0.91
Cytoplasmic	553	604	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQAGTPDD DVEDIEKSFY VSGKEQARVS TDLAVDEPIS VQPEPRKGWN GFVDTFRRAE  60
   61 MPVIDPNLSE AEKLAIRTAA APLSRRLKNR HLQMIAIGGA IGVGLFVGSG KALATAGPAG 120
  121 VLIGWGLTAT MILIMCLSLG ELAVTFPVSG GYITYAARFI DESWGFANNF NYMMQAMVVM 180
  181 PLEIVAASVT VGYWDTDPKY KLAFVALFWV VIVSINLFGV RGFGEAESIF SLIKVITIIG 240
  241 FIIMGVVLIS GGGPDHEVIG GKYWNDPGPF VGNAPSDKFK GVCSVFVTAA FSFAGSELIG 300
  301 LAAAETREPR KSIPKAAKQV FWRITLFYIL SLLIVGLLVP SNNEHLLAPQ QIDAAHSPFV 360
  361 IAMDMHRIRV LPSIINVVIL TAVISVGNSS VYSSSRTMCA LAEHGFLPKI FGYIDRKGRP 420
  421 LFAICFTSLF GLLCFVAGAK EEGEIFDWLL AISGLSSFFT WLTINLAHMR FRMALKAQGR 480
  481 TTNELSFTSP TGFIGSCYAV GLICVVLVAQ FWVALYPPSP DGTSAKPSPI LFFKQYLSFA 540
  541 VAIVMYLAHK IWSRNWKFFI KAKEMDIDTG RRELDLELFK EELAQERALL AQKPFIIRVF 600
  601 NFWC