YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44985803, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNVVIGPS SQPHEREDTE QLLEQPAGPA TGREAFKTKL RRHLDVVARH FNILDRLFKR  60
   61 QPGAEAGVQF GAHADGVFSN LTAKPDRGHE AVDGDKPPTY DEAAADVVPP YYGIDDEGVA 120
  121 LYYNEICIDG LPVGNAVNFL WNLIISASFQ FVGFLLTYIL HTSHAARQGS RFGLGLTFAG 180
  181 YGYSMIPSDV TSKVGKDRDI ARVELDDPNE FEDSHLYSPL AQPAQDRFES QLSHGLMENR 240
  241 RSIPALAIVL EILGLAIMCK SVYDYIVVKR MERRFLTASD GESPA

Type	Start	End	Confidence
Cytoplasmic	1	138	0.60
Transmembrane Helix	139	161	0.77
Non-Cytoplasmic	162	242	0.71
Transmembrane Helix	243	264	0.67
Cytoplasmic	265	285	0.68