YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEMT_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLLGYVDL SEPHFVAAVL AIVFNPLFWN VVARWEHKTR KLSKAFGSPR LACYTLGGAI  60
   61 LLLNVLRSHC FTQAMLSQPR MQSLDNPAVY HVGLALLGVG GVFVLSSFLA LGFTGTFLGD 120
  121 YFGILKEARV TMFPFSVLDN PMYWGSTAIY LGWAIVHASP TGLLLTALVA LIYMVAIVYE 180
  181 EPFTAEIYQQ KASQAYKRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.84
Transmembrane Helix	14	33	0.93
Cytoplasmic	34	50	0.82
Transmembrane Helix	51	71	0.84
Non-Cytoplasmic	72	91	0.74
Transmembrane Helix	92	118	0.84
Cytoplasmic	119	131	0.64
Transmembrane Helix	132	151	0.55
Non-Cytoplasmic	152	152	0.32
Transmembrane Helix	153	179	0.78
Cytoplasmic	180	199	0.71