YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|44986044
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLHMGLVAA LAPLGDVVRG SHLESVAQHF DIKHWQTPRL DLSAARNERL LVFDDFQAFE  60
   61 YYNYKGQQLF TGQEQHQGSS LIYYSEGTYV QLAKLDDDTV VRRIVPFGSD SFILSGTGKL 120
  121 QDQRLEHQLM YNLSTLEVTE ILPQSLESVN DILVDGDMVY FGGQFTYSDG NKSGHSAVQW 180
  181 NATSRTTSLL PFGGFGRGSS VNNILKLSGS GVLFVGRFSN LEAASYAETA SVLASTEKPQ 240
  241 LNVTTIETNA LTSLRYSTIT SDGHLDKGKF ICPTSNDDSW FVPHSGDGPA RGELNIKVLH 300
  301 RIIPSKIRIY NSKKNGNEIK LFRIVTSPSQ SIMNMTYIDP NTGELATCDA WCPLMPRSNL 360
  361 TSKAAESGPA DVARLVNDEK VLIKWTPDYQ EFAFINQIHM EEIKFIALDS YGNNVGLVGV 420
  421 ELFQTEYDAY VNSTLNQPNC GEQQLSPFST TANIWHQGAT DASYLSANVV ESNPMVNVKP 480
  481 VIPHSGTYTL NLYTPGCEDD GTCDYRGIVN VTLLASNGTT LMTRWIYQNN YRLKYDPLYT 540
  541 GHLDPNPTVR MEWVSPINSA VNRKIMVADR VSAIIDSLDG LDDIRHPREK SLNGLFQYTP 600
  601 AGSSLDNGIQ KYINKDPQTD MPEGVSLVGQ VYDGKLILGV KSTGHIAVVT PKGTDWNDVD 660
  661 VTRQDVPGSL NGISPYSKGL VFTGKFNLSS GPSSALHYDG NFGSFFDLNS ETSSIINMTI 720
  721 DGSELLLFNN KFIYNTSTSQ MLTSSMFQLS ALSAAANSNN DLLFTGSIAD IKHGSAHGAV 780
  781 ALDAEGNIFT SGTPSISGAR VHRGVYLNDT ATAYAYYSVS PNSSVATGGV VIETPGNNFN 840
  841 LSNNIATVRE MIYVKKTNFL VISTNEVEGT PGALILYDLR TLQEVAREKL NPGERINSIV 900
  901 LFGEDNTLLV GGSFEKDGCH DLCLYNFVKR SWSAFASGLI SGEIKQLQFV NNRNLIAVGS 960
  961 MTVQSRPNIL FLNFDLVRSR VVEQHEQPNG RAFNSVLTIG DSGDEYVAED GKQVWHYSGS1020
 1021 EWKTVTPLSG GQIRIDGISL LMLNNPRSQN KRNRVGNELV VIHGQMNSSE YGEINAMHYN1080
 1081 FENWEPYYFT IGSSAREEFN VPRGQIFLNQ DISRQTTTSL PLEVVVSDSP PTAEPKRKLA1140
 1141 KGYVVLIALG LALATIALLG IIGVILAYAF GDHNAYQPLK PRINEDEMLK TVPPEKLMKF1200
 1201 I

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle