YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24940462
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNSTVTQAIM FGVRCGAAAL TLIVMWMISR NRKTPIFIIN QVSLFLIILH SALYFKYLLS  60
   61 NYSSVTYALT GFPQFISRGD VHVYGATNII QVLLVASIET SLVFQIKVIF TGDNFKRIGL 120
  121 MLTSISFTLG IATVAMYFVS AVKGMIVTYN DVSATQDKYF NASTILLASS INFMSFVLVV 180
  181 KLILAVRSRR FLGLKQFDSF HILLIMSFQS LLVPSVIFIL AYSLKPNQGT DVLTTVATLL 240
  241 AVLSLPLSSM WATAANNSSK TNTITSDFTT STDRFYPGTL SSFQTDSINN DAKSSLRSRL 300
  301 YDLYPRRKEL TSDKHSERTF VAEAANDIEK NQFYQLPTPT SSKNTRIGPF ADTSYKEGDI 360
  361 EPVNMYTPDT AADEEARKFW TEDNDN

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.86
Transmembrane Helix	8	28	0.93
Cytoplasmic	29	35	0.89
Transmembrane Helix	36	58	0.87
Non-Cytoplasmic	59	83	0.92
Transmembrane Helix	84	106	0.83
Cytoplasmic	107	117	0.82
Transmembrane Helix	118	141	0.88
Non-Cytoplasmic	142	161	0.91
Transmembrane Helix	162	184	0.91
Cytoplasmic	185	199	0.92
Transmembrane Helix	200	222	0.92
Non-Cytoplasmic	223	231	0.83
Transmembrane Helix	232	254	0.86
Cytoplasmic	255	386	0.96