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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|33589406
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNDPDLDDC AFLSGGESSG GRQTRTGVAV CSQRRALLVA GIVLGSLLLT AIIIAYAGPQ  60
   61 NDCSCGSKTV SGYETDEENN TQPFNPIATN GEPFPWLEKM LPTSVRPLRY MVTIHPNLTT 120
  121 LDVKGQVTID LHVEKETNFI VLHIQDLNVT EKAIVTPGPK GYALKIVKVL EFPPRQQLYI 180
  181 EVKERLKKKS NYTLNLRWYS KLNPEPEGFY VDQYESSNGV ERLLAATVFR PNGARRAFPC 240
  241 FDEPHVRAPF RISVFRDRFH IGLSNSIVHT TEDVGFYMGT GLLRDDFIET PPLPADAVAW 300
  301 VVSDFQRESL QPSAAYIPTT PAPPGSGVGG KKSAQLNNYT QLKGKNPPVR NITALTHSLN 360
  361 VNLTPRQNLT VVQPTTTTAW PVNLNGNGKP SNLTSLSQST GSSIKRAPSY TFYAPRDLLI 420
  421 RSSFILHTSR DVLEYLQTWL DISYPLTKVD FVALPSLDRN MISSLGLVTL KTSFLTDPSS 480
  481 ITSEQYQFSA LRIAEAMVRQ FFGGITSRKV LKDVWLWEGL IQYLGIHALA PLQETWPLRE 540
  541 MYLLKMATAA LDIDAIQGWD SIMNGTSHDG NNEEFFVQKT AAIFSMLHTA IGEDRFRGCL 600
  601 GSFLKVNRFR TAEPTDLWTI CTKKANGSKN IKDMMTLWTH QPGFPLLTVT KMGNSISISQ 660
  661 RPFRPAEFLA IHDDSYDGNN YNKTTLNATD MPSTVATTTQ GSKHKVAPHM KWIFPVTYVA 720
  721 DINNVSETLW MQNVDVTFNV PENVKWIKVN AIQNGYYRVV YNDDNWASLI EELAANPNRF 780
  781 TSEDRLGMLS DAFTLCHANL LPCEITMNMI QYLPSETHYG PMALALRHLE KWRRILKYSE 840
  841 CFLMLSEFIK MKISTVMEKV GWSDDGDVAT RLLRPEVLLA SVLWEDIDSI TKAKNMLNQY 900
  901 LYYNGTAIPP NLREVVYTGS ILSGEYIYWQ HCWERFVNLQ RTSETFVERM QLLRALGRTK 960
  961 DAWLQNRLLS HVTMLPTEEV VQVLKAIAGT PTGGAMACRL LQAKWFELEK RLGPGTISFA1020
 1021 KVISAITQYG ATKFDYDELK SLVHRFGRGH GMSVLNMTLS SVASNVEWVA RSQTSLYKWV1080
 1081 EGNLHSHR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle