YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33589454
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.97
Transmembrane Helix	29	51	0.81
Non-Cytoplasmic	52	57	0.68
Transmembrane Helix	58	88	0.70
Cytoplasmic	89	101	0.74
Transmembrane Helix	102	126	0.87
Non-Cytoplasmic	127	202	0.97
Transmembrane Helix	203	225	0.90
Cytoplasmic	226	233	0.93
Transmembrane Helix	234	256	0.92
Non-Cytoplasmic	257	276	0.88
Transmembrane Helix	277	299	0.85
Cytoplasmic	300	311	0.74
Transmembrane Helix	312	334	0.87
Non-Cytoplasmic	335	374	0.93
Transmembrane Helix	375	396	0.92
Cytoplasmic	397	413	0.92
Transmembrane Helix	414	437	0.91
Non-Cytoplasmic	438	444	0.87
Transmembrane Helix	445	465	0.96
Cytoplasmic	466	485	0.97
Transmembrane Helix	486	509	0.94
Non-Cytoplasmic	510	517	0.83
Transmembrane Helix	518	542	0.88
Cytoplasmic	543	594	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYETSYDTG HKPFSPDLNR GKWDKPTDFM FACFGLALKL DVFVASFWMF FDMGILGILP  60
   61 YFVYMSIYLV PIMVIHSFMG QFSSSGFISA FRLSPFFKGM GYVSGFLTIS MLIYYSIFAA 120
  121 VPLLFIINSF RPTLPWSCEG LSSWHNGSAT LSSSCNKTLI LEDFSEYNRS HQLLHVPSVL 180
  181 YFQNHYDSMQ QDAVPDWYKD YELSWHFVGL FAIIWVVIAF IFYKFSETAK FGKLIRYMVI 240
  241 VTLVLLLVCF VRFLFLPGAL NGLHRYVTPK ASDMAMGVVS TFIMVLHAFG AGWGSVITLS 300
  301 SFNGFKTDIM SYSWIISFGQ IFIYIMFGMV SFMLEHYFNE LSDVDDNGHV LSHWLLYLSS 360
  361 ASALSTMAWP NLWTFIYYSM LLIAALIVMT TQIFTVLQSL FDEFEVLRVR KQEVTFGLIG 420
  421 GIALCSFYFC TNHGIIFFSA LGLDAIFSHS LLHLLLLLVV LWIYGRERFQ RDIEFMLGQP 480
  481 FASWKVFILR FIAPIILVIC LLAGIALSIS EHSYSTTVVF VMSIVLVVLP ILAIPGYGFY 540
  541 YLYQSTGTFC ERFKRTCRPT DWYPVEMEHR QQYEEAVDST EMTHQLFEVT EEVN