YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33589588
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.95
Transmembrane Helix	70	95	0.77
Non-Cytoplasmic	96	139	0.89
Transmembrane Helix	140	161	0.77
Cytoplasmic	162	171	0.88
Transmembrane Helix	172	192	0.95
Non-Cytoplasmic	193	202	0.71
Transmembrane Helix	203	224	0.81
Cytoplasmic	225	232	0.87
Transmembrane Helix	233	255	0.90
Non-Cytoplasmic	256	264	0.80
Transmembrane Helix	265	285	0.95
Cytoplasmic	286	340	0.98
Transmembrane Helix	341	364	0.82
Non-Cytoplasmic	365	390	0.90
Transmembrane Helix	391	413	0.87
Cytoplasmic	414	422	0.93
Transmembrane Helix	423	444	0.89
Non-Cytoplasmic	445	448	0.78
Transmembrane Helix	449	468	0.88
Cytoplasmic	469	470	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPHKWTDES RDASCYYDPS TSSNSSASAE RSDDEADDER EAFCSGERPL IRSSGAAEEN  60
   61 HGCGPKTRHI FGFMGFLGFA VVYAMRVNLS VAIVAMVNQT AIPHSNSSVI DTDTCPLPAP 120
  121 HHNGSDPNPQ KEGEFVWDEA TQGLVLGSFF YGYVLTQVPG GRMAELYGGK KIYGYGVLIT 180
  181 AVFTLITPLA AHWDLPLLVL VRILEGMGEG VTYPAMHAML AHWIPPLERN KFAAIVYAGS 240
  241 NIGTVISMPL AGWLCSLDFL GGWPSAFYIF GLLGILWFIA WMYLVYDKPS DHPRISESER 300
  301 EYIERSLQVQ RLINQDLAEA EEEEGQDEVS LRAPPEEPIP WSSLLTSVPL WAILLTQCGQ 360
  361 GWAFYTQLTE LPTYMSNILH FDIQSNALLN AVPYLTSWFV GIACSALADW MLARRYISLL 420
  421 NSYKLWNTVA SVVPSLGLIG IIYVGCDWVW VTFMLAAWAL SAAPSMLATR