YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33636547
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.87
Transmembrane Helix	32	54	0.80
Non-Cytoplasmic	55	76	0.87
Transmembrane Helix	77	96	0.86
Cytoplasmic	97	103	0.70
Transmembrane Helix	104	125	0.90
Non-Cytoplasmic	126	132	0.68
Transmembrane Helix	133	154	0.84
Cytoplasmic	155	166	0.86
Transmembrane Helix	167	189	0.90
Non-Cytoplasmic	190	197	0.79
Transmembrane Helix	198	217	0.95
Cytoplasmic	218	258	0.97
Transmembrane Helix	259	277	0.91
Non-Cytoplasmic	278	306	0.85
Transmembrane Helix	307	326	0.94
Cytoplasmic	327	343	0.91
Transmembrane Helix	344	364	0.93
Non-Cytoplasmic	365	371	0.83
Transmembrane Helix	372	392	0.93
Cytoplasmic	393	405	0.78
Transmembrane Helix	406	429	0.87
Non-Cytoplasmic	430	439	0.80
Transmembrane Helix	440	460	0.95
Cytoplasmic	461	497	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLGCLPCCN HNGYQQIGNT DPRFGVRHLQ CILVFFGLAV AYSLRVNLSV AIVAMTDRNA  60
   61 SNPDFPEFDW NESTKSYLLS SFFWGYVVTQ IPGGYLSAIY GAKYMLFYGV LICSCLALLT 120
  121 PFCAVNGGWT VVVVLRAVQG LCQGVIFPST HTFLSKWAPA EERGRLVGYT YSGSQFGTVV 180
  181 MLSVSGYIAS SSLGWPSTFY IPGCVGIVWS FVWLYLCSST PAQHPTITPN ERRFIESSGQ 240
  241 ARSPSDAGRE EQPRPPTPWW RIFTSVPFLV LVLAHCANNW GFWTLLTEIP TFMKNVLGMD 300
  301 IKNNGPLSAL PYFAMILLTC VFIWLSDTLK QRGTVIPLGF SRKFFNTLGM WLPMLALIGL 360
  361 GYITEGEANV RLAIGLLTAA VATNSATYLG FHVNHIDLSP NYAGTLMGIT NCAANFMSIL 420
  421 APLIVGLIVW DETNPAQWRI VFFFTAFVYF IGNLLFMLFG RTRVQPWNSR PTTRTPSPGG 480
  481 GGERDEGTED RGPLIGA