YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21629327, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGHVEASG SPLQPLMKGP RPPSNDERPH GVFKSTDGIA SNVNDDLRAR RSRASYDYLV  60
   61 GASDGRSLGN TSNNFVYHSN RKPTGGRSLE YLDGDQNRIS NVAQNLGDHH DDPHCFDSDS 120
  121 DSGECLLDHQ IRLLEAKKSA ASSRKCANPG PVGLLGFGLS TILLNLHNTG NFPLSTVIVA 180
  181 MGICLGGGAQ FIAGMLEWVR GNTFAYVAFT SYGTFWLSLV CVWMLPNTAA GTSNLVAPAS 240
  241 EYFVGVYLFL WGIFSFVMLL CTIRMNLAIF LVFLTVTLLF LMLGCSSMAN SAIGLRAAGY 300
  301 EGIICGSLAL YLAFAEILNE MWDRTVLPVI PMTQALGWFG TLKGYKATQL DKRNRSTRNA 360
  361 SQQSERGVRR

Type	Start	End	Confidence
Cytoplasmic	1	145	0.98
Transmembrane Helix	146	166	0.89
Non-Cytoplasmic	167	173	0.75
Transmembrane Helix	174	194	0.94
Cytoplasmic	195	203	0.78
Transmembrane Helix	204	226	0.89
Non-Cytoplasmic	227	242	0.78
Transmembrane Helix	243	262	0.90
Cytoplasmic	263	268	0.71
Transmembrane Helix	269	289	0.91
Non-Cytoplasmic	290	296	0.65
Transmembrane Helix	297	315	0.88
Cytoplasmic	316	370	0.81