YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23577989\|ref\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATDLHPHT RSTNEKKIGT WPGVIQAELI RVKATAVVWF PAIGLLIGAL SSLFSLWSSN  60
   61 ATDASGLLSW QAMYVTGMAA PILALLAGLA ETREKKSRHG GTDIRPVSAW KIRTGRLLIL 120
  121 VGLSGLFYAF NFGGVWLYAV IDGRLGAQRI LLAGLLGWIG SIATIGLFSA IARATNLITA 180
  181 LLLAVAYQLA GTLTAEASWW YFFPPAWPVR LLLPTMGIHS NAVALDPTDP LTSESPLVGI 240
  241 VLNLVLAVAM MGLSIVFNGQ RVLRTPFRPQ RASLSTDAES SATAMDDTTV SHLEFIRRDH 300
  301 VQDTREKQWA RPPDGGHGGF NQEADFRIAG PRSSNTAGAR YLHQECLRTV L

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	57	0.92
Non-Cytoplasmic	58	69	0.83
Transmembrane Helix	70	90	0.93
Cytoplasmic	91	116	0.91
Transmembrane Helix	117	139	0.88
Non-Cytoplasmic	140	149	0.80
Transmembrane Helix	150	171	0.91
Cytoplasmic	172	177	0.81
Transmembrane Helix	178	200	0.88
Non-Cytoplasmic	201	236	0.91
Transmembrane Helix	237	259	0.91
Cytoplasmic	260	351	0.94