YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68491735, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.89
Transmembrane Helix	12	32	0.93
Cytoplasmic	33	37	0.79
Transmembrane Helix	38	58	0.84
Non-Cytoplasmic	59	68	0.81
Transmembrane Helix	69	90	0.85
Cytoplasmic	91	101	0.81
Transmembrane Helix	102	125	0.90
Non-Cytoplasmic	126	133	0.81
Transmembrane Helix	134	153	0.94
Cytoplasmic	154	173	0.85
Transmembrane Helix	174	197	0.83
Non-Cytoplasmic	198	204	0.89
Transmembrane Helix	205	227	0.92
Cytoplasmic	228	243	0.86
Transmembrane Helix	244	263	0.90
Non-Cytoplasmic	264	267	0.76
Transmembrane Helix	268	285	0.90
Cytoplasmic	286	294	0.82
Transmembrane Helix	295	315	0.89
Non-Cytoplasmic	316	324	0.82
Transmembrane Helix	325	343	0.93
Cytoplasmic	344	362	0.85
Transmembrane Helix	363	382	0.95
Non-Cytoplasmic	383	413	0.92
Transmembrane Helix	414	438	0.90
Cytoplasmic	439	800	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWSQLELEP PHIAYACVGI FSTLFSLVSL FVKERLYIGE ATVASIAGLI LGPHCLNWFD  60
   61 PVSWGNSDYI TLEICRIVLC IQIVAVAVEL PKKYMMKHWL SVTIFLLPVM TCGWLIVGLF 120
  121 IWCLIPHFTF NDGLLVSACV TATDPVLAAA VVGKGKFAER VPGHLRNLLS AESGCNDGMA 180
  181 FPFIFLSLNL IIHSGHAGEI VKDWFLLTIL WECIFGCLLG TVIGYVLRKL VAFAENQNLI 240
  241 DRESFLAIFV FIAFISAGIG SMLGVDDLLV SFAAGTAFGW NGAFAKKTEE SHVSTVIDLV 300
  301 LNLSLFVYFG AIIPWPQFNN ADLGLNVWRL VVLAFVIIFL RRIPAVVALK PITPDVKTWR 360
  361 EALFCGHFGP IGVGAIFASI LARKDLEAHY TTEETPLHHL PNEDFPHYQL LATIWPIVCF 420
  421 IVITSIIVHG SSVAVLTLGK RLNRMAITMS FTTDQEGNGS GGWMQRLQKL DRATTSFSLH 480
  481 RVDTMAPTEK SQPETTGTKV RPTGGAKRKK NHRDDRTPPE AQILQLGGNK TPEPESASDT 540
  541 LAIPNKTSGL SAFGEKPPTK AEKAPVPTVA YQDGDQVIIE DQYGEVMENL KLTTKPVRAP 600
  601 DIGSIHSMES LERHLTQYST GSGEYTTDED THGLQEKLSR SLSRRSYYKK DDPNKRKVYA 660
  661 HRVDDLIVIE NEDGDIIRRY KVNKHAPAPR ARSGSIMGMV KSMVGIKPPP EISVTDLEHG 720
  721 TQHKIILPEE ENTPMSSKTE QKLEDTIANI LQENHTQPIS EESADEESAD EEETEVEKKR 780
  781 RLQALGYLPS SRRDREDEEE