YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11677, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.93
Transmembrane Helix	45	66	0.92
Cytoplasmic	67	74	0.82
Transmembrane Helix	75	97	0.85
Non-Cytoplasmic	98	108	0.74
Transmembrane Helix	109	127	0.80
Cytoplasmic	128	138	0.69
Transmembrane Helix	139	161	0.93
Non-Cytoplasmic	162	242	0.52
Transmembrane Helix	243	267	0.90
Cytoplasmic	268	275	0.62
Transmembrane Helix	276	293	0.65
Non-Cytoplasmic	294	297	0.70
Transmembrane Helix	298	318	0.89
Cytoplasmic	319	330	0.85
Transmembrane Helix	331	351	0.87
Non-Cytoplasmic	352	358	0.71
Transmembrane Helix	359	380	0.87
Cytoplasmic	381	422	0.74
Transmembrane Helix	423	442	0.91
Non-Cytoplasmic	443	448	0.61
Transmembrane Helix	449	470	0.92
Cytoplasmic	471	663	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLTIYAAK ILLKRAISGD LEEDTPDLTT PDDAEDSNPV ENEIFSSWAL FILLFLLMSA  60
   61 LWSSYFLQQR RIKAVHETVL SIFCGMIVGL IIRMSPGHYI QDAVKFNPGY FFNILLPPII 120
  121 LNSGYELHQA NFFRNLGSIL TFAIPGTFIS ALVVGIILYI WTALGLDNVS LEFVDALAVG 180
  181 ATLSATDPVT ILSIFNAYKV DPKLYTIIFG ESLLNDAISI VMFETCQKFH GQPVRFSSFF 240
  241 QGVGLFLMTF TISTIIGIFI GILVALILKH SHIRRYPQIE TCLVLLFAYQ SYFFSNGAHM 300
  301 SGIVSLLFCG ITLKHYAYFN MSRRTQIATK YIFQLLAQLS ENFIFIYLGL SLFTEVELVF 360
  361 KPMLIIVAFI AICVARWSAV FPLSRFLNFF YRTRFERYSA GTLSTSAGNM INMPDEISHS 420
  421 YQMMIFWAGL RGAVGVALAM GFSGEAKWTL LATVLVVVVL TVILFGGTTA SMLEILGIKI 480
  481 GCVDESGDFS DDEFDIEAPP RFPQQSQQSN ISSVANKNQN IYGNRRFARS SKLSNYKDNL 540
  541 SAVNLLDQEH GGVPNTGNSS TSNFANVNDD DDDDEIVGSD VDDFISGSIS NSTSNINNNN 600
  601 DRGGVLGAIL SAEEHAKWFT RFDEEVLKPV LLDTLPSTGQ SSQNNSTSNL NSSGNGNGKR 660
  661 NQS