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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.8985, orf1...
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHPNNSVVD MSSTGNMNEN TDAPPKQQTK KKISKQNSTK TDFFAARLAS AVDDIESSDS  60
   61 DETFIYENND TELDDNASNI NNNNNNSTNN IINLDNASVN GSMIASSNAM VTGPPGTSIA 120
  121 LGSGLRSPSI LEGEQLQYFH DPVRQQQFKL PSTKAPSISN SISSSNNIDS ILKRPVHLRE 180
  181 ASTYSVNDND HRNLVLPNST ERFTASPSNN IGNENIPQYQ KTSSVAHSIN EGYNDDTFSY 240
  241 NEVEDNLIDE DSTDDGDLTK NTITNNNNPP TTSSQQQPQP QPQPQPQQPQ LHTSSPLNQI 300
  301 QAATSATPSV STKNASKRNY KTSSTSSKLR STTSKLFDKK GSQPRRYSTI PDDIDIEDFD 360
  361 DELIYYDNTA RFPANESTSL LNQNQRIPHY RSLNLNFPQV KRQSKRYLST GQPLESSDRG 420
  421 SNKDGTDNGN NSDHNINSPL TANNNNNNVN HNDHGDNKKS NTNNNNIANN RAFPFPYQDQ 480
  481 QHHYYYDYDD FDQESQINGP NFDLPDLPIN RSASRNFNNN NNPKRFGDSH FFLPRKTDQY 540
  541 SQRTSFLKSC IHTFVCILIV LTIGFVLGFV LATTKDLTDV GITSIENPIV SKDELVFNVV 600
  601 IEAFNPGWFS VDINEVELDL FARSGYLPDT DNSKISNMGG SQKVETVKLG TILNFESVLN 660
  661 FKGGFLSREP TIQKGGIRLL YPGKNVTAEA KLVVNMADIK IAASNSIAKE STTSNDTNDN 720
  721 DNSKKWEIIS SNPFDLIITG VLKYDLPFSR TSRSVVVRKT GYIDPTLFVI PQGENNISI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle