YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.14210, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVAIKNGI SKLVSSKDAS DAELERVERL IDSNQIPYGS TDSNDERAQQ LAREEAIIQA  60
   61 AASISAASSS ENKEEEGVDS ITAFFNTFDP RVMSDIIIGL SDGLTVPFAL TAGLSSLGDS 120
  121 KLVITGGMAE LVSGAISMGL GGYLAAKSES EYYFSQVKKE KLEFFKKPEA INQDAAEIMF 180
  181 ELGASEQTII SFLKDLDAKP KNLIDFVIRY GKGLEEPAAG RELTSALTIG ASYFLGGFVP 240
  241 LLPYFFTKEV GTGLIISVVA MLVVLMLFGY FKCSISMGEG CPNHKKFAAG FEMVVVGSIA 300
  301 AGAAWGLVFL IE

Type	Start	End	Confidence
Cytoplasmic	1	95	0.93
Transmembrane Helix	96	115	0.70
Non-Cytoplasmic	116	122	0.63
Transmembrane Helix	123	145	0.72
Cytoplasmic	146	222	0.95
Transmembrane Helix	223	245	0.86
Non-Cytoplasmic	246	251	0.76
Transmembrane Helix	252	271	0.95
Cytoplasmic	272	286	0.86
Transmembrane Helix	287	309	0.91
Non-Cytoplasmic	310	312	0.75