YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MMM1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDLIETTA TTTKIVEARE LGHQIHDSLL EQLKLQQEEL LQQQRDLFFQ EQQLQLQQQV  60
   61 TQPVSNNGNT WSFTQGLVIG QVSVIFIIIV FVKFFVFADS SSHIPTKPGL DGATGVIVKR 120
  121 NKNKKHSNGQ FANDGENEDD TSLDSNQSKI SSILEKTYYD VNNHASESLD WFNVLVAQTI 180
  181 SQLRSEALLK DNIYHSLNNF LTNAKLPDFI DTINLTEIDI GDDFPIFSNC RIKYGEDLKR 240
  241 LEAKIDVDLS DTLTLGIATK LLLNQPRPLT AVLPVSMTVS IVRFSGCLTV SLINTKDIDL 300
  301 KNVDKTSNMN GYSKENANGD GASSSNNDED EDDGGTALMF SFSPDYRLEF IVKSLIGSRA 360
  361 KLQDVPKISS LIENQLRTWF IERCVEPRFQ VVRLPSLWPR TKNTREPVTK KTTTTPSTTV 420
  421 NGTSAATVTT PGEYVNSNI

Type	Start	End	Confidence
Cytoplasmic	1	76	0.71
Transmembrane Helix	77	97	0.84
Non-Cytoplasmic	98	439	0.82