YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11166, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLDYNPVPF DHTYILYDPN DIIAKICVQF SLLPIYLMVF YTSWFLITRE IEPVIIVGGH  60
   61 LINELINKII KVSIKSPRPD FHKNFGRDGG SYGMTYGFPS AHSQFMGFFA GYYICVILLK 120
  121 VPMPKSSKKP ICLFAAISMM GVAFSRVYLL YHSNVQVIAG LITGVTLGII YFIITSVARD 180
  181 VGLVEWILNW PIIKYFYVKD TYYHIYQTFA EEYEVYLQLR RERNEALLSA IIGNEKNSIS 240
  241 I

Type	Start	End	Confidence
Cytoplasmic	1	25	0.89
Transmembrane Helix	26	47	0.82
Non-Cytoplasmic	48	100	0.94
Transmembrane Helix	101	121	0.91
Cytoplasmic	122	130	0.86
Transmembrane Helix	131	150	0.96
Non-Cytoplasmic	151	156	0.84
Transmembrane Helix	157	178	0.90
Cytoplasmic	179	241	0.98