YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21309886
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSQILPLA GAISVASGFW IPDFSNKQNS NSYPGQYKGK GGYQDDCGDD YKKGYKSKTY  60
   61 SKVKPITSTD CTTPIQPTGT TTGYTKDVVE STSYTTDTAY TTTVITVTKC DGGSCSHTAV 120
  121 TTGVTIITVT TNDVITEYTT YCPLTSTPAT ESTPATESTP ATESTPATES TPATESTPAT 180
  181 ESTPCTTSTE TTPATESTPA TESTPATEST PATESTPATE STPATESTPA TESTPATEST 240
  241 PCTTSTETTP ATESTASTET ASSTPVESTV IVPSTTVITV SSCYEDKCSV SSVTTGVVTI 300
  301 SSEETIYTTY CPITSSITIP VPNTSTPAAP GTPVESQPVI PGTETTPAAP GTPVESQPVI 360
  361 PGTETTPAAP GTPVESQPAT TPVAPGTETT PAAPGTPVES QPATTPVAPG TETTPAAPGT 420
  421 PVESQPVIPG TETTPAAAGT PVESQPATTP VAPGTETTPA APGTPVESQP VIPGTETTPA 480
  481 APGTPVESQP ATTPVASGTE TTPAAPGTPV ESQPVIPGTE TTPAAPGTPG TEATPVTTQP 540
  541 VSVLSTSQVV TASGEFSTVT AHSTSIVASC PEGGCVPEGQ QTETSPSVPT NGPEVEASSS 600
  601 VLSIPVSSVT TSTIASSSET SVPPAQVSTF EGSGSALKKP YYGLAVAALV YFM

Type	Start	End	Confidence
Signal Peptide	1	18	0.89
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	653	0.99