YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238878216
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDVFNVQIF FIVFRESLEA IIVVSVLLAF VKQSMGGSSD PQLKKRLYRQ IWLGAGLGVL  60
   61 VCLIIGCAFI GAFYGLGKDI WGNSEDLWEG IFCIIATVLI TAMGIPMLRI NKMKEKWRVK 120
  121 LAQALIKSPT NKKDRFKLGY LGKKYALFIL PFITCLREGL EAVVFVGGVG LNSPATSFPI 180
  181 PVIVGLIAGI VVGALLYYFG SSMSMQIFLI ISTCILYLIA AGLFSRGIWY FETNTYNKKT 240
  241 GGDASENGSG PGTYDISKSV WHVNCCNPET DNGWDIFNAI LGWQNSATYG SVISYNIYWL 300
  301 FIICVLLLMV YEEKHGHLPF TKNLTLVQLN PMYHIKGKKK LELNKAEKDE LFTKLQQQNF 360
  361 GQAAEVDETS SNKLIESKEN K

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.75
Transmembrane Helix	12	31	0.83
Cytoplasmic	32	50	0.93
Transmembrane Helix	51	74	0.94
Non-Cytoplasmic	75	87	0.91
Transmembrane Helix	88	110	0.91
Cytoplasmic	111	144	0.96
Transmembrane Helix	145	167	0.85
Non-Cytoplasmic	168	177	0.77
Transmembrane Helix	178	199	0.94
Cytoplasmic	200	206	0.84
Transmembrane Helix	207	228	0.91
Non-Cytoplasmic	229	290	0.95
Transmembrane Helix	291	311	0.91
Cytoplasmic	312	381	0.98