YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.10400, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.91
Transmembrane Helix	62	82	0.88
Non-Cytoplasmic	83	93	0.69
Transmembrane Helix	94	112	0.94
Cytoplasmic	113	120	0.76
Transmembrane Helix	121	142	0.91
Non-Cytoplasmic	143	169	0.87
Transmembrane Helix	170	190	0.87
Cytoplasmic	191	197	0.88
Transmembrane Helix	198	216	0.93
Non-Cytoplasmic	217	246	0.88
Transmembrane Helix	247	263	0.92
Cytoplasmic	264	273	0.67
Transmembrane Helix	274	293	0.95
Non-Cytoplasmic	294	313	0.79
Transmembrane Helix	314	332	0.85
Cytoplasmic	333	400	0.82
Transmembrane Helix	401	421	0.94
Non-Cytoplasmic	422	428	0.76
Transmembrane Helix	429	450	0.92
Cytoplasmic	451	459	0.86
Transmembrane Helix	460	479	0.93
Non-Cytoplasmic	480	495	0.85
Transmembrane Helix	496	520	0.86
Cytoplasmic	521	591	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIQKTLKR MVRKWTTKDG LLGDYDYKYL FTPDIPFITK ELKTQPFFGV DSDMPILLGA  60
   61 ILGFQHALAM LAGIVTVPIM VASTANLSVE IEQYLVSTSL IVSGVLSLIQ ITRFHIPKTP 120
  121 YYIGTGLLSV VGTSFATITI VTKAFPMMYA DGTCPMASDG VTKLPCPDGY GKILASACCC 180
  181 ALLEILLSFM KPSMLQKIFP PLVTGPVVML IGVHLVESGF TDWVGGAGCQ NSDTCTYGKF 240
  241 SAPWGDAKFI GLGFLVYVSI ILAERFGAPI MKSCAVIFGL LIGCIVAAAA GYFSSDNVDA 300
  301 APAASFMWVH TFKLTVYGPV VLPFLAVYIV LMMECIGDVT ATSDVSRLPV SGEMYESRIQ 360
  361 GGVLGDGICG ILSTLMTMTP MSVFAQNNGV ISITKCANRK VGYWCAFFLI VMGVFAKFAG 420
  421 AITSIPKPVL GGMTSFLFCS VAISGIKIIS TTEFTRRDRF VLTAAVLPGL GATMLPNWFE 480
  481 HVFTYQGGNK SLKGFFNAII VVVESGFCLS GVIAVILNLL IPQVEDDVEE INELVLDVVG 540
  541 SATESARQKF EEKEGVKLEA LRSQLSNIKS NGGSQDAITV LHRNDGFPDL K