YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7426
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIVNYIIGL LLYIEVALCS SHSAIRLTEL AKESQDYIID VYNSDLSILE GPRDYFTVLL  60
   61 FTSSNADHNC KQCEGFKNVV TKVANSWFSD HTDSHLLTFI TIDLNDPKNG KLFSLIGLQT 120
  121 VPHIWLVAPN PSRDYGDPNK ILEDAHLEFK MPQVSQDKQT LEFAQFISEQ LQKPILIRDT 180
  181 DALTKFIKTF VITFSVIIII RKKGPSRITA TKKKTIVSLV AIAIVLLFTC GYQFTIQNSV 240
  241 PFVAKSNNGD IVLISGGQYY QFGIETFLVG ANYASLAGAL LLLTYIGCYK VTERSFITSE 300
  301 DIRVLLVLLV TILIYLLYSC LTSIVLRKDQ GYPYSFIKLF

Type	Start	End	Confidence
Cytoplasmic	1	214	0.51
Transmembrane Helix	215	236	0.93
Non-Cytoplasmic	237	266	0.94
Transmembrane Helix	267	289	0.88
Cytoplasmic	290	303	0.91
Transmembrane Helix	304	326	0.93
Non-Cytoplasmic	327	340	0.98