YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GMT_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.95
Transmembrane Helix	52	73	0.81
Non-Cytoplasmic	74	86	0.68
Transmembrane Helix	87	107	0.89
Cytoplasmic	108	122	0.85
Transmembrane Helix	123	141	0.87
Non-Cytoplasmic	142	148	0.63
Transmembrane Helix	149	168	0.86
Cytoplasmic	169	174	0.70
Transmembrane Helix	175	193	0.92
Non-Cytoplasmic	194	206	0.81
Transmembrane Helix	207	228	0.92
Cytoplasmic	229	242	0.94
Transmembrane Helix	243	262	0.92
Non-Cytoplasmic	263	280	0.85
Transmembrane Helix	281	301	0.91
Cytoplasmic	302	309	0.72
Transmembrane Helix	310	330	0.72
Non-Cytoplasmic	331	335	0.54
Transmembrane Helix	336	355	0.85
Cytoplasmic	356	371	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVISFYLIG QLLYLIRKKY TTTYRQQQQY QYNMDSKHST SSSSSGSLAT RISNSGPISI  60
   61 AAYCLSSILM TVTNKYVLSG FSFNLNFFLL AVQSIVCIVT IGSLKSLNII TYRQFNKDEA 120
  121 KKWSPIAFLL VAMIYTSSKA LQYLSIPVYT IFKNLTIILI AYGEVIWFGG KVTTMALSSF 180
  181 LLMVLSSVIA YYGDNAAVKS HDDAFALYLG YFWMLTNCFA SAAFVLIMRK RIKLTNFKDF 240
  241 DTMYYNNLLS IPILLICSFI FEDWSSANVS LNFPADNRVT TITAMILSGA SSVGISYCSA 300
  301 WCVRVTSSTT YSMVGALNKL PIALSGLIFF EAAVNFWSVS SIFVGFGAGL VYAVAKQKQQ 360
  361 KEQSQQLPTT K