YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.12847, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.90
Transmembrane Helix	65	85	0.87
Non-Cytoplasmic	86	96	0.77
Transmembrane Helix	97	119	0.85
Cytoplasmic	120	124	0.67
Transmembrane Helix	125	143	0.89
Non-Cytoplasmic	144	150	0.81
Transmembrane Helix	151	174	0.88
Cytoplasmic	175	186	0.88
Transmembrane Helix	187	207	0.94
Non-Cytoplasmic	208	220	0.89
Transmembrane Helix	221	242	0.91
Cytoplasmic	243	277	0.94
Transmembrane Helix	278	294	0.96
Non-Cytoplasmic	295	313	0.89
Transmembrane Helix	314	333	0.94
Cytoplasmic	334	341	0.93
Transmembrane Helix	342	361	0.91
Non-Cytoplasmic	362	393	0.92
Transmembrane Helix	394	415	0.89
Cytoplasmic	416	427	0.78
Transmembrane Helix	428	445	0.71
Non-Cytoplasmic	446	455	0.62
Transmembrane Helix	456	476	0.90
Cytoplasmic	477	509	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDQTKMDI NSNTSSSNKD LEVQPEHLEL KHHTNAEIEA SGSWIDKQIN ILGAKFRFSS  60
   61 AMCQIVLLAF VVFLTPGMFN ALSGIGAAIS DKKTADLANT ALYVTFSTVG FFAGTICNVI 120
  121 GVKMSLVFGG FGYAIYAGSL LSFNHNENKG FVIFAGAFLG FCASLLWAAQ GTIIMSYPTE 180
  181 QTKGRAIMVF WVIFNLGAVI GSIIPLAENM HNQGSSASDG TFIAFIILMI CGSVLANFML 240
  241 PISKVWKSDG TRVMTKTHPY WKDELIGLGR TLIKEPKILL MFPMFFASNW FYTYQFNNVN 300
  301 YGRFNLRTRS LNSLLYWLAQ MFGAIVLGYI LDFKKFKRST RAKIGWAILF VTSLAIWGGG 360
  361 LKFQMSFTRE EVESKPPKIS QLDFKDGAYI GPMFLYIFYG VFDAIFQTYT IWVLGAMSNN 420
  421 PKKTALYAGF YKGIQSAGAA IAWRLDSLEV KYMSLFASSW GLVQGSLVLA IPLIFFMIKD 480
  481 HTALEDDNMG EVVDDAELDV VKSTTVHIE