YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.261
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.88
Transmembrane Helix	81	101	0.82
Non-Cytoplasmic	102	116	0.82
Transmembrane Helix	117	139	0.90
Cytoplasmic	140	150	0.80
Transmembrane Helix	151	169	0.82
Non-Cytoplasmic	170	215	0.53
Transmembrane Helix	216	234	0.63
Cytoplasmic	235	254	0.66
Transmembrane Helix	255	274	0.91
Non-Cytoplasmic	275	280	0.59
Transmembrane Helix	281	300	0.80
Cytoplasmic	301	305	0.55
Transmembrane Helix	306	327	0.81
Non-Cytoplasmic	328	348	0.90
Transmembrane Helix	349	370	0.93
Cytoplasmic	371	378	0.89
Transmembrane Helix	379	396	0.94
Non-Cytoplasmic	397	402	0.69
Transmembrane Helix	403	424	0.83
Cytoplasmic	425	447	0.87
Transmembrane Helix	448	469	0.73
Non-Cytoplasmic	470	475	0.71
Transmembrane Helix	476	496	0.76
Cytoplasmic	497	510	0.83
Transmembrane Helix	511	532	0.70
Non-Cytoplasmic	533	586	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRKRKNES KKPNPTARST AAIFQDINNL DELESKTEID NNKSNEETND EPAGSPEEDI  60
   61 ANASFPFNYL YRVQDHLNEN MSVVHAVQCL VSLFFIQMVY LDRVKIIDYS KDEHLPMQVI 120
  121 AVIFFNWVGV FLCTVLGMVK NKSENKVMPD FNYIYSLLLP ALLSVLHFNK DWLLVNLSLN 180
  181 YFVIDSMNPI FNLFSSLGFY EVYKDEETTL ISTFQFGQYA AIFLVFQYIL NYINTAETDD 240
  241 DSNAKPRTSL KRSEIHLIVL LLINILFNPA FTGGNVLPMK IFQKLIISFI ISSFFTFPII 300
  301 SFTPGILVIL IFGGIFYGFT IFQLTPILND NAVNWLYNYV MKDETRVHII SIWVAMSVTI 360
  361 IPIVFYFANY LRLNTRRKIW HGLMVIALCF TPEILFGQIE FTLISLLGTL IVFMIVEGIR 420
  421 YNRLSYIGEF LHKTLSVFQD TKDLQGPLNL SYIYLLAGVT IPIVYDYLVN KDTVTIIRYS 480
  481 GLITLGVGDT FASVIGKKFG TFKWKGSNKS VQGTIAFIVS VLLCTYSADY YLTQNNTNYL 540
  541 PIKNWENTFV TILLAGFLEG TCDINDNYLI PIFFPISYEL LNKSYK