YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573475, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	72	0.89
Transmembrane Helix	73	93	0.93
Cytoplasmic	94	100	0.87
Transmembrane Helix	101	121	0.93
Non-Cytoplasmic	122	127	0.82
Transmembrane Helix	128	149	0.92
Cytoplasmic	150	160	0.78
Transmembrane Helix	161	179	0.87
Non-Cytoplasmic	180	193	0.74
Transmembrane Helix	194	214	0.90
Cytoplasmic	215	281	0.91
Transmembrane Helix	282	303	0.79
Non-Cytoplasmic	304	316	0.81
Transmembrane Helix	317	338	0.87
Cytoplasmic	339	345	0.84
Transmembrane Helix	346	368	0.91
Non-Cytoplasmic	369	376	0.73
Transmembrane Helix	377	400	0.91
Cytoplasmic	401	412	0.80
Transmembrane Helix	413	433	0.76
Non-Cytoplasmic	434	447	0.79
Transmembrane Helix	448	468	0.94
Cytoplasmic	469	526	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANIQALMK SYVNFDEHTS GSAARGILIG MFAAFGGFLF GYDTGTISGV LSMDYVKARF  60
   61 PNNKTDFTSG ESSLIVSILS VGTFVGSLIA PLFSDRIGRR WTLILSTLIV FNLGVLLQTV 120
  121 ATEKKLLIAG RAIAGTGVGL ISSVIPNYIS ETTPKWARGA VTASYQWMIT WGLLIAACAN 180
  181 KGSQGRKDSG SYRIPIGIQF LWALILGIGF LFLPETPRYW VSKSEETKAK DSLRRIRNLP 240
  241 VDHPDLVSEY DDIKANFDFE SKYATSSWTQ VFKNVNKQHH RLFTGVAIQA LQQLTGINFI 300
  301 FYYGTQFFKR SGIEDPFLIQ LATNIVNVGM TVPGIILVET WGRRPLLMAG SVVMAVSQLI 360
  361 VAIVGVAASS HAANQCLVAF SCIFIAGFAA TWGPLCWAIC GESFALNVRS KSISLCTASN 420
  421 WLWNFGIGYA TPYMVDSGKG NADLGSKVFF IWGGCNVIGG LFAYFMVYET KSLTLEQVDE 480
  481 LYLKVDHAWQ SKGFVPSVHA FRDDGDIEHI SSDGKAEMVE VDENSV