YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.4279
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQKLIKNRQ RSKWVLFTGA SLWIFFILDF MNSNYYNTES HISSYSIYNV YDNLHEETES  60
   61 PPKSALSSSL LEPSTNQQTS DFKNHLLYKS LISSLFQNTT KQTKDLNSNI YDDIFSNHKL 120
  121 ETVLGTLSFK ERCDLYFKNV FAEDVNWHFN PDTRYDMHFD KNTKEFKDFI KVKELVIQEK 180
  181 FDKMKEKFKE EDYNRELSKL KKSMFTDFLN EKFEQEIVNR LSTFRIFNKC YITNDETPQI 240
  241 NKINQFITNQ QKLVQDIHRD ESGNFYKSKI DKLKLTNKEA LVDLMVTKSS TFEHRVYPWI 300
  301 SKEYPVYERW TGKVYHEPPN YYEILNHDPM QKTPKKIQQS NNAAQPFLKQ FKNKFNGRGI 360
  361 VLTIGNQHSD YAVSLIHLLR ALDNKLPIQI VYYDDVNEES KRKIVTAAQE DFRSLPHSFE 420
  421 KVAHLFGDKY INSQGKGLQP QEVWFVNAYN SIHKNYRGKF SRFGNKLLAS LFNSFSEFML 480
  481 IDVDTVLMQP PEYFFQLKNY QTTGTYFFKD RSVLQRRTVE DGKFFERMGP STVDQMMFDI 540
  541 PIMTNYTTTR ELFRGLQHYM ESGLVMINKD KHLNSILMIT QINLIGPITG KVWGDKELFW 600
  601 LGFAINGDEE YYFDDNFAAA IGELTPPQDR ARKDGTWHHS KEICSPHPGH VSGDDNHSLL 660
  661 WINSGFRFCH QADEVNFEKE AKKKTRLKHL HTADQFRTFY YNPLRITHAV VPPLDQDLQD 720
  721 RKNAMDEPTS GWLWESGYCK RYMWCAYSSV GGPQKRPDEK DDTVDNNETK DNTLDGILVE 780
  781 YNQDEIALFN YLGDIWVGTE 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle