YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4335
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.97
Transmembrane Helix	59	79	0.83
Non-Cytoplasmic	80	101	0.85
Transmembrane Helix	102	122	0.86
Cytoplasmic	123	128	0.87
Transmembrane Helix	129	148	0.95
Non-Cytoplasmic	149	155	0.73
Transmembrane Helix	156	178	0.89
Cytoplasmic	179	188	0.87
Transmembrane Helix	189	210	0.92
Non-Cytoplasmic	211	223	0.93
Transmembrane Helix	224	245	0.93
Cytoplasmic	246	291	0.98
Transmembrane Helix	292	313	0.91
Non-Cytoplasmic	314	332	0.84
Transmembrane Helix	333	351	0.95
Cytoplasmic	352	357	0.92
Transmembrane Helix	358	379	0.92
Non-Cytoplasmic	380	386	0.80
Transmembrane Helix	387	409	0.91
Cytoplasmic	410	419	0.88
Transmembrane Helix	420	441	0.93
Non-Cytoplasmic	442	449	0.87
Transmembrane Helix	450	471	0.95
Cytoplasmic	472	510	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLAEEKHT TDMSKDPEYI SSDDSFPEDI AENKVDPEIE VEQLAQELGI NQKKLMWKID  60
   61 LWVVPPFCLL YFLSFLDRVN ISNANIYGLT ADLKLTGNQY NTALTVFFVP YVVFEVLANY 120
  121 CIKFVKPHIW LSTLVLLFGG ISIGMGFVQN FGGLVACRFL IGVTEASTFP SIFYLLSTYY 180
  181 SKAESQRRFS AFFSCTALSG AASGAIAYRI NELNMVHGLE SWRWIFIIEG AITAGCAILL 240
  241 FFIIADFPEE ARFLNANERT FLKRKLEILA GTKSAYEIKN TIKDVAKCFK DWLIWLPALS 300
  301 YFGLIIPSYG YAYFAATIIK QMGYTAVSAQ QHSVYPWVCA FGVINVVAFI SDRFKRRLPF 360
  361 AIGTCIMAIV GLAMILGATH SPKVRYAGCF LTASGLYTAM PMVVCWAALN NGSHIRKSVG 420
  421 TAWQIGFGNI GGIIATFIFL AKDAPVYKPG LATSIAGVCF SILCSLAYFF VCHRMNQVKQ 480
  481 TDAYKQDFNA MPEREQINAG DRNPNFVYLY