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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.4966, orf1...
Protein type: Transmembrane
Type Confidence: 0.72
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLSSELKA KEIFNQFATE GANEEKIITL PDFINVLSPF TTDIPKQAFS LLYLIADAEK  60
   61 KGFVTEDNWL KFVNTLTSPD GEYKLLYQFL SGQQNTNSKI TYSQCIDILN KINSSIDPSY 120
  121 QQKLIKLNWI YFPRFFEPNG SIEFNDFVTL ISYLPVTKLI GNFEITASKS KTVNGEELVR 180
  181 LLSTNLNHKL SNKLKINLHN VTDFFGKQQD YTLSNLLFIY DALSKVDLIN EVIVNTPPTT 240
  241 KDKDDILINK TDLYNHLNDP LLKSANFKPV SRLELDLLFY LINKKTDEDI PRRELVSFLN 300
  301 PNFNNNLNTL APIFEHSQSK HSTIDGGDNF SLWPLYDSLY SFFLGSIAGC IGATAVYPID 360
  361 LVKTRMQAQK HNALYDNSLD CFKKILRNEG FKGLYSGLGA QLVGVAPEKA IKLTVNDLVR 420
  421 GIGSNEDGSI TMKWEILAGS TAGGCQVIFT NPLEIVKIRL QMQGNTKNLS KPGEIPHKHL 480
  481 NASQIIRQLG LRGLYKGASA CLLRDVPFSA IYFPTYANLK KHMFGFDPND KTKHQKLSTW 540
  541 QLLVAGALAG APAAFFTTPA DVIKTRLQVA GKKNEAKYKG ILDCGASILK QEGLSAFFKG 600
  601 SLARVFRSSP QFGFTLASYE LLQNLFPLHP PLTRESSFKG ISGYPGVYNL TNDQVYNSQE 660
  661 KNERLILMNK SELSPSPSSS SSSLDTVNDT LVKLPAEYIY KSQDAVKLLL DIDYKFGNFN 720
  721 YDSYVNYIKK K

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle