YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4985, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.89
Transmembrane Helix	47	66	0.66
Non-Cytoplasmic	67	141	0.53
Transmembrane Helix	142	166	0.81
Cytoplasmic	167	181	0.51
Transmembrane Helix	182	202	0.79
Non-Cytoplasmic	203	206	0.54
Transmembrane Helix	207	229	0.49
Cytoplasmic	230	339	0.61
Transmembrane Helix	340	360	0.92
Non-Cytoplasmic	361	374	0.80
Transmembrane Helix	375	394	0.92
Cytoplasmic	395	437	0.96
Transmembrane Helix	438	458	0.64
Non-Cytoplasmic	459	477	0.63
Transmembrane Helix	478	498	0.95
Cytoplasmic	499	508	0.76
Transmembrane Helix	509	530	0.91
Non-Cytoplasmic	531	549	0.87
Transmembrane Helix	550	569	0.94
Cytoplasmic	570	584	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYLSQLGKL FSLETLDTRL NPTTNPIKRQ SIIKKANPTS RWSTLEFKIY LTILIIVVPL  60
   61 MIKAAMESSN ETNPNYPRFQ HLLSDGWILG RKVDNSDQQY RFFRNNFPLL CGLIFIHVTL 120
  121 RKLINTFIII PNGRYNNNFK RTYFDLIFGI IFLIGAHGIN VFKISFHLFI NYLIGKYIKN 180
  181 YKLAIWCTWI YGIFSLFFNE WFGDSSFGLS IFVNGSGYYT GIIPRWDVFY NFTLLRMLSF 240
  241 NLDYIERERK LGNNDGQLNL NKQENINGAD NPPTLLNLDD RQRLSAPLPL DDYNVSNYIA 300
  301 YISYTPLFIA GPIITFNDYV YQSNYQQSST TQNYQRIFMY AIRFLFCLLV MEFLLHFMYV 360
  361 VAVSKTKAWD GDTPFQISML GMFNLNLIWL KLLIPWRLFR LWALLDGIDP PENMIRCMDN 420
  421 NFSALAFWRA WHRSYNRWVI RYIYIPMGGS GTGKYRIINS LLVFSFVAIW HDIELKLLMW 480
  481 GWLVVIFLIP EISATLIFSK YNKNWWYRYL CGIGAVINIW MMMIANLVGF CLGTDGMWKL 540
  541 LHDLFQTFEG GRFFIISSIC LFVGAQIMFE LRESELRRAI DVRC