YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573680
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALYDIINYF YGSNSKFNRI TWGFKSPTFI KWRITDFILI IVLIVLFFVT SQAEPFHRQF  60
   61 YLNDMTIQHP FAEHERVTNI QLGLYSTVIP LSVIIIVALI STCPPKYKLY NTWVSSIGLL 120
  121 LSVLITSFVT NIVKNWFGRL RPDFLDRCQP ANDTPKDKLV SIEVCTTDNL DRLADGFRTT 180
  181 PSGHSSISFA GLFYLTLFLL GQSQANNGKT SSWRTMISFI PWLMACYIAL SRTQDYRHHF 240
  241 IDVFVGSCLG LIIAIWQYFR LFPWFGGNQA NDSFNNRIMI EEIKRKEEIK QDENNYRRIS 300
  301 DISTNV

Type	Start	End	Confidence
Cytoplasmic	1	31	0.88
Transmembrane Helix	32	53	0.88
Non-Cytoplasmic	54	80	0.86
Transmembrane Helix	81	102	0.90
Cytoplasmic	103	109	0.76
Transmembrane Helix	110	132	0.88
Non-Cytoplasmic	133	182	0.86
Transmembrane Helix	183	201	0.91
Cytoplasmic	202	211	0.72
Transmembrane Helix	212	231	0.91
Non-Cytoplasmic	232	238	0.72
Transmembrane Helix	239	259	0.94
Cytoplasmic	260	306	0.83