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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PRM10_CANAL
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNRPTYDT SSSDEEPSNH FHIQLPQRQL NLQEIRKQNH KKHEKPTIAK QTASNLAKAK  60
   61 KITTGSNHKF GNSINNNNNN ANKHLGSSSA GTNRRSLISP TSSTHVSSDD DDDDDDNAAF 120
  121 YGDKLNDNKK LNVFADTKNN LSHFQFNADG IKPKSLHGQG DDSSDDDGNN LDEVEDETHS 180
  181 DFAVLNQNHP PQQYYETDSS DEDEEDDDEV PQTVHKTYSN ASSGRSSRLS RKKSMSETTD 240
  241 TRAPIPPTGR RSTNSNHSRE SSGRRSTSSG NINSGGGLKG ILRKMSLVDS TPVDSTNQDI 300
  301 SHSDTFLGRV LNFGTNQGLS GGGLAPGASR VIREEDEGEW NLDEERRVGF AAHENDRDAF 360
  361 EMQPLNYEDL SEEAKQLIQQ HVPGAGASNL DHSQQSSAAP STEITPSQSP NQHLLNEKSN 420
  421 NNENNQQSTT VESSSSTSSP GEDEELARRR ASEERKKAEN PFYTPNPDLF LRGTNADNQE 480
  481 LHQAPNDFLH DMDGDYIAPP KQVQAGVLSS LLRLYQNPQE QKSASSLSRV STGTSGTALS 540
  541 SFDDSYDSDD YKDSKSSSNV DLQHKLKSGI KGGSKAMFNK AANKLKHHSH TRTNTVETQG 600
  601 SSNSEEFSND KDEFSNGYDD DNKMNANLPS FQNARPKMPK KKTTEPVQKL KKLRHKQRAE 660
  661 RLRITVHIAD ILQRQRFIMN MCRALMLFGA PTHRLEEYMV MTSRVLEIDG QFIYFPGCML 720
  721 VSFGDAATRT SEVHLVRCAQ GINLSKLADT HKIYKAVIHD LIGVEDASKK LDDLLKSKSR 780
  781 YPPWLCVLFY GLGSLAVTPF AFEGGWLDLP ISFGVGLCVG YLQFYVSSIS NLYSSVFEVS 840
  841 AAIVVAFIAR GIGSIKGGDL FCFSAIAQGS LAIILPGYII LCGSLELQSR NLVAGAVRMF 900
  901 YAVIYSLFLG FGITLGAALY GWIDHNATSA NSCASGHAID EKWRILFVPM FALCLGLINQ 960
  961 ARWSQVPIMI VIAGIGYIGS FFAGKHFSTV TEFTACIGAF IVGVLGNLYS RIWKGMAVSA1020
 1021 MLPAIFVQVP SGIASKSSLI SGLNTADQIT NKSSSNNGGT VTNDASSLSF GATMVEVSIG1080
 1081 ISVGLFAAAL IIYPFGKKRT GLFAL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle