YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|51173739
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKDRRHRS LTRGRCGKEC RYTSSSLDSE DCRVPAQKYY SSSETLKAYD HDTRMHYGNR  60
   61 VSDLVHRESD EFPRQGTNFT LAELGICEPS PHRSGYCSDI GILHQGYSLS TGSDADSDTE 120
  121 GGMSPEHAIR LWGRGIKSRR SSGLSSRENS ALTLTDSDNE NKSDEENDFH THLSEKLKDR 180
  181 QTSWQQLAET KNSLIRRPIP PTSSSSLLPS AQLPSSHNPP PVSCQMPLLD SNTSHQIMDT 240
  241 NPDEEFSPNS YLLRACSGPQ QASSSGPSNH HSQSTLRPPL PPPHNHSLSH HHSSANSLNR 300
  301 NSLTNRRNQI HAPAPAPNDL ATTPESVQLQ DSWVLNSNVP LETRHFLFKT SSGTTPLFSS 360
  361 SSPGYPLTSG TVYTPPPRLL PRNTFSRNAF KLKKPSKYCS WKCAALSAIA AAVLLAILLA 420
  421 YFIAMHLLGL NWQLQPADGH TFSNGLRPGA AGAEDGAAAP PAGRGPWVTR NSSIDSGETE 480
  481 VGRKVTQEVP PGVFWRSQIH ISQPQFLKFN ISLGKDALFG VYIRRGLPPS HAQYDFMERL 540
  541 DGKEKWSVVE SPRERRSIQT LVQNEAVFVQ YLDVGLWHLA FYNDGKDKEV VSFSTVILDS 600
  601 VQDCPRNCHG NGECVSGVCH CFPGFHGADC AKAACPVLCS GNGQYSKGTC LCYSGWKGPE 660
  661 CDVPISQCID PSCGGHGSCI EGNCVCSIGY KGENCEEVDC LDPTCSNHGV CVNGECLCSP 720
  721 GWGGINCELP RAQCPDQCSG HGTYLSDTGL CSCDPNWMGP DCSVEVCSVD CGTHGVCIGG 780
  781 ACRCEEGWTG VACDQRVCHP RCTEHGTCKD GKCECREGWN GEHCTIGRQT TGTETDGCPD 840
  841 LCNGNGRCTL GQNSWQCVCQ TGWRGPGCNV AMETSCADNK DNEGDGLVDC LVPDCCLQST 900
  901 CQNSLLCRGS RDPLDIIQQS HSGSPAVKSF YDRIKLLVGK DSTHIIPGEN PFNSSLVSLI 960
  961 RGQVVTTDGT PLVGVNVSFV KYPKYGYTIT RQDGMFDLVA NGGSSLTLHF ERAPFMSQER1020
 1021 TVWLPWNSFY AMDTLVMKTE ENSIPSCDLS GFVRPDPVII SSPLSTFFSD APGRNPIVPE1080
 1081 TQVLHEEIEV PGSSIKLIYL SSRTAGYKSL LKIIMTQSLV PLNLIKVHLM VAVEGHLFQK1140
 1141 SFLASPNLAY TFIWDKTDAY GQKVYGLSDA VVSVGFEYET CPSLILWEKR TALLQGFELD1200
 1201 PSNLGGWSLD KHHVLNVKSG ILHKGNGENQ FLTQQPAVIT SIMGNGRRRS ISCPSCNGLA1260
 1261 EGNKLLAPVA LAVGIDGSLF VGDFNYIRRI FPSRNVTSIL ELRNKEFKHS NNPAHKYYLA1320
 1321 VDPVSGSLYV SDTNSRRIYK VKSLTGTKDL AGNSEVVAGT GEQCLPFDEA RCGDGGKAVD1380
 1381 ATLMSPRGIA VDKYGLMYFV DATMIRKVDQ NGIISTLLGS NDLTAVRPLS CDSSMDVSQV1440
 1441 RLEWPTDLAV DPMDNSLYVL ENNVILRITE NHQVSIIAGR PMHCQVPGID YSLSKLAIHS1500
 1501 ALESASAIAI SHTGVLYISE TDEKKINRLR QVTTNGEICL LAGAASDCDC KNDVNCNCYS1560
 1561 GDDGYATDAI LNSPSSLAVA PDGTIYIADL GNIRIRAVSK NRPILNSFNQ YEAASPGEQE1620
 1621 LYVFNADGIH QYTLSLVTGE YLYNFTYSSD NDVTEVMDSN GNSLKVRRDA SGMPRHLLMP1680
 1681 DNQIVTLAVG TNGGLKLVST QTLELGLMTY NGNSGLLATK SDETGWTTFY DYDHEGRLTN1740
 1741 VTRPTGVVTS LHREMEKSIT IDIENSNRDD DVTVITNLSS VEASYTVVQD QVRNSYQLCN1800
 1801 NGTLRVMYAN GMSISFHSEP HVLAGTVTPT IGRCNISLPM ENGLNSIEWR LRKEQIKGKV1860
 1861 TVFGRKLRVH GRNLLSIDYD RNIRTEKIYD DHRKFTLRII YDQLGRPFLW LPSSGLAAVN1920
 1921 VSYFFNGRLA GLQRGAMSER TDIDKQGRII SRMFADGKVW SYTYLEKSMV LLLQSQRQYI1980
 1981 FEYDSSDRLH AVTMPSVARH SMSTHTSVGY IRNIYNPPES NASVIFDYSD DGRILKTSFL2040
 2041 GTGRQVFYKY GKLSKLSEIV YDSTAVTFGY DETTGVLKMV NLQSGGFSCT IRYRKIGPLV2100
 2101 DKQIYRFSEE GMVNARFDYT YHDNSFRIAS IKPIISETPL PVDLYRYDEI SGKVEHFGKF2160
 2161 GVIYYDINQI ITTAVMTLSK HFDTHGRIKE VQYEMFRSLM YWMTVQYDSM GRVTKRELKL2220
 2221 GPYANTTKYT YDYDGDGQLQ SVAVNDRPTW RYSYDLNGNL HLLNPGNSVR LMPLRYDLRD2280
 2281 RITRLGDIPY KIDDDGFLCQ RGSDVFEYNS KGLLTRAYNK ANGWNVQYRY DGLGRRASCK2340
 2341 TNLGHHLQYF YADLHNPTRV THVYNHSNSE ITSLYYDLQG HLFAMESSSG EEYYVASDNT2400
 2401 GTPLAVFSIN GLMIKQLQYT AYGEIYYDSN PDFQLVIGFH GGLYDPLTKL VHFTQRDYDV2460
 2461 LAGRWTSPDY TMWKNIGREP APFNLYMFKS NNPLSNELDL KNYVTDVKSW LVMFGFQLSN2520
 2521 IIPGFPRAKM YFVSPPYELT ESQACENGQL ITGVQQTTER HNQAFMALEG QVISKRLHAS2580
 2581 IREKAGHWFA TSTPIIGKGI MFAVKKGRVT TGISSIATDD SRKIASVLNS AHYLEKMHYS2640
 2641 IEGKDTHYFV KIGSADSDLV TLAMTSGRKV LDSGVNVTVS QPTLLINGRT RRFTNIEFQY2700
 2701 STLLINIRYG LTADTLDEEK ARVLDQARQR ALGSAWAKEQ QKARDGREGS RVWTDGEKQQ2760
 2761 LLNTGRVQGY EGYYVLPVEQ YPELADSSSN IQFLRQNEMG KR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle