YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34482028
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQVCLTLIY VLPFYVSPSM RPSATLSRDA PSVIRARIRA VTLSCLICSV AVLWVIVAKD  60
   61 DSSFTHALKL MGWWPISFTD IFRSLLLTAI LFTGPLFERG VAEGEWREWF KRDRISETLG 120
  121 GWIGWRNYIA VRLSLVQLAH LIDGAIQGPI TEEVMFRSAI IPLHLLARIS PGHIVWVAPL 180
  181 YFGVAHVHHF YEFRLTHPDT SVIAAVLRSV FQFAYTTVFG WYATFVYLRT GSLFAVILIH 240
  241 MFCNWCGLPR LWGRVEAAVP IRPTFNRGKE DSDKSLEYSY GHLGIGWTVA YYALLVGGAT 300
  301 SFGYSLWSLT ESLHALAEFT SS

Type	Start	End	Confidence
Cytoplasmic	1	37	0.93
Transmembrane Helix	38	58	0.94
Non-Cytoplasmic	59	80	0.86
Transmembrane Helix	81	102	0.85
Cytoplasmic	103	164	0.73
Transmembrane Helix	165	190	0.75
Non-Cytoplasmic	191	217	0.42
Transmembrane Helix	218	248	0.73
Cytoplasmic	249	283	0.59
Transmembrane Helix	284	307	0.82
Non-Cytoplasmic	308	322	0.57