YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49099983, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPSLFGPA TAGSSAFLQL WLLSQLSGAS ALSFQPVSRP ELDLSRLGHV ALTGEFDAVT  60
   61 FYSYAEQKNA KAGDDDSQSI LAPLPNGILT TLSTSDADIR AMCAFSKQDG SHSGIYVGGN 120
  121 FTSLGGEKAN GVALYDPISN KVTTLPGLSG SVSALLCDQE TNTVYVGGSF KQGNTSNAAA 180
  181 WVVGEGWKDL SFGGLNGPVS SIVKNDDAHI VFGGSFDGIG NSTSSSKKIE QVINLSNATI 240
  241 TSDTTSTRSG FTDPRNIICQ TSGAGGAGQT WLLADYALGY WRADMRYNFS PTKLRVYNTH 300
  301 YEGRGTKSFL FRRLPDNGIM NLTYTDPSTG DDVNCDQYCS LSDDPDEEYR DFRFVNQVGM 360
  361 TGFMFEIRDY YGTGAGLNGI EVFTNDVFTY AINDFNEPTC GNSSDISTST RTGSWTLTDG 420
  421 NDSPSDYLTA HVSDSDAAST SVVFEPNIQR SGNYSILVYT PGCVQDGTCG SRGIVNVTAT 480
  481 VRADSEELIE KQIYQTNNYE KYDTIYTGPV DVSDDSFRPR VTLSPVAGQG DLTVVASRVR 540
  541 FELISASNDT SGELNGLFEY DPTSKNATAN LLGSTINSSG TQLDSDASVL SLVTHRGVIY 600
  601 AGGNFSSSDI NNLFSLEQDA NATALPQGGL NSEVTTMSVL NDKLYVGGNF TGTSEGATDS 660
  661 LSYVASYSID SKSWSALGGG VNGHVKRVFA LPLNVSTVIN ETIVAVSGDF DELLPFDEYP 720
  721 AVAVSGFAVW VPSRNNWLQN LNVSQTQFAG HLSSFASFNG TTILGGSLSS GGLAAGGAVA 780
  781 LLQEDGLQLG PLLNSTQLTG EIITGIYDTD SSRNLTILGG HFNLSTGGQE VRNLAFIDGG 840
  841 TGSISGLGTE VENNSTFMAF AITSNVLYAG GRVTGTVGKN EIDGLVLYDL QNGTIAQEQP 900
  901 SKFNGDNVSV NAIAPRPNSK EIYVGGYFQA AGALTCPGVC YYDTESQQWN RPGVGLEGSV 960
  961 LALKWGNANT LIAVGNLTVA GNETAVASYS AKEQIWEVFD GASSSSIPGT VTAFSPANGD1020
 1021 ASRFWLAGQS SNGSNFIVNY DGSSFQLAQE IFDDGTIIRG LDVIPLASDH DDSDLLNNDL1080
 1081 ALMITGQIAV PEFGTASAAL FNGTTLIPFV ISSKSDGQPG RMSRMFYENN NPYARGSGHH1140
 1141 SNGIVVLVAF CCALGCVFLI VIAGVIFNKI QRRRQGYMAA PQSTGTDRPT SMRRLPPEYL1200
 1201 FNSLKQPNPG APSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle