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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40738897, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGRAPGRH PAAGRDDDLL QLEESTPIYN TGRPPPVNDE SLLRQYNIDD SENAQPRPSV  60
   61 SYDNFVGGRV TPHAGAHATG SAPPVHAGVY MNDPYSGQDV SRTYSQTSGL DNYQRYSMDE 120
  121 YEGGHGYYDM TGQDPMEGDS RMRERNSILS MGGGLMGRAK HMLGMKPEYS EMDLPLTEAG 180
  181 ARAARADSTV SEDGPPHAKK SSKPSFKFGF GRRTVDSSTL GPRIIQLNNP PANAVHKFVD 240
  241 NHVSTAKYNI VTFLPKFLYE QFSKYANLFF LFTAVLQQIP NVSPTNRYTT IGPLVIVLLV 300
  301 SAIKELVEDY KRRSSDKSLN YSKTQVLKGS TFHETKWVDV AVGDIVRVES EQPFPADLVL 360
  361 LASSEPEGLC YIETANLDGE TNLKIKQAIP ETSHLVSPAD LSRLSGRIRS EQPNSSLYTY 420
  421 EATLTMHAGG GERELPLAPD QLMLRGATLR NTPWIHGVVV FTGHETKLMR NATATPIKRT 480
  481 AVERMVNIQI LMLVSILVAL SVVSSVGDLI IRQTEKDKLT YLDYGSTNPG KQFIMDIFTY 540
  541 WVLYSNLVPI SLFVTIEIVK YSQAFLINSD LDIYYDVTDT PATCRTSSLV EELGQIEYIF 600
  601 SDKTGTLTCN MMEFKECTIG GIQYGEDVAE DRRATVEDGV EVGVHDFKKL RQNLESHPTK 660
  661 DAIHHFLTLL ATCHTVIPER SEADPDKIKY QAASPDEGAL VEGAARMGYK FSNRKPRSVI 720
  721 ITVAGQEYEY ELLAVCEFNS TRKRMSTIFR CPDGRIRIYI KGADTVILER LHQDNPIVEG 780
  781 TLQHLEEYAS DGLRTLCLAM REIPEDEFQQ WYQIFDKAAT TVGGNRAEEL DKAAELIEKD 840
  841 FYLLGATAKE DRLQDGVPDT IHTLQTAGIK IWVLTGDRQE TAINIGMSCK LISEDMTLLI 900
  901 VNEDSAEATR DNLTKKLQAV QSQTEAEQMA LIIDGRSLTF ALEKDMEKLF LDLAVLCKAV 960
  961 VCCCSRVSPL QKALVVKLVK RHLKSLLLAI GDGANDVSMI QAAHVGVGIS GVEGLQAARS1020
 1021 ADVSIAQFRY LRKLLLVHGA WSYHRISRVI LYSFYKNIAL YMTQFWYSFQ NAFSGEVIYE1080
 1081 SWTLSFYNVF FTVLPPFAMG ICDQFISARL LDRYPQLYQL GQKGLFFKRH SFWSWIANGF1140
 1141 YHSLLLYIVS QLIFLYDLPQ ADGKVAGHWV WGSALYTAVL ATVLGKAALI TNIWTKYTFI1200
 1201 AIPGSMIIWL AFLPAYGYAA PAIGFSEEYY GTIPRLFTSP IFYLMAIVLP CICLLRDYAW1260
 1261 KYAKRMYYPQ HYHHVQEIQK YNVQDYRPRM EQFQKAIRKV RQVQRMRKQR GYAFSQADEG1320
 1321 GQMRVVNAYD TTRGRGRYGE MTSSRNLV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle