YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67540198, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPGQPTPQ QLAAMQQQFA AEAAKRGLTP EEFAKQQREQ LNAEAAKHGM TTEQYVTQLR  60
   61 MRAMAAQQKA AEVQRQLQAN GQSQGPPRPG QPGQPGQPQT HTQQVPVNPN SPKDPKAIAV 120
  121 AQFLRSQNLK PRTCIMDGQR KDMFKVKRAI RALESPAYEK ARKKNPLLPP VTDRASAENV 180
  181 FKLLPLSVLA LRVSKVDPHA GHGHGKTKRV KGLWTVKIEQ HQEADPMMHY VWLYEGPQWK 240
  241 QKAMAAAVVA GIFAVVLFPL WPIMLRQAVW YLSVGMMGLL GLFFAMAIFR LILFCITVFA 300
  301 VPPGLWLFPN LFEDVGFFDS FKPLWGWQET GKKKKKSKKA ASSAAQTSNP QATESAPAAT 360
  361 AETAPAATTT ATESADAAGP VKRDLAPRVE EVEE

Type	Start	End	Confidence
Cytoplasmic	1	242	0.72
Transmembrane Helix	243	265	0.88
Non-Cytoplasmic	266	269	0.58
Transmembrane Helix	270	301	0.73
Cytoplasmic	302	394	0.63