YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40740326, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPSLDQLV KGSPAPSNRL RSLSAPSAEP LKSSSSSYPS TASVSSTPSS TTANDPLSAL  60
   61 PSSPPQIYLN LLILESSLRA QYLALRERRR QNTFFLLLLA AWITYFGYAL FLRPREDGRG 120
  121 VGGSVYWMVE MWERVALLGG VVTALLVWGT GQWERGIRWP RRWLAVANRG LRTMNTKIVV 180
  181 IRGPWWQELL SYLSFLFPFS TPFFTSAVGD FHYLDRPVSE KRGGRSLQNY YNIDPESGLV 240
  241 EEDLSPGGDH IRLLLLPKLF SPEFRGNWDD YRTDFWDKEN ERRAQLREKL RQRERQIARQ 300
  301 EGSWFWWIGL GRNASRRRRL AAATLHRSIE NDKGHRHAHH SHPSISKLAH ESKSPLRRST 360
  361 RSDSHSRTPS RSTTPIDTDD RPPSRSSGSG RPRRGSLTPS TPGSSIEQSP RRKRTGSKTL 420
  421 NRGLSPLTQA QIREGVYPPS IASDDSASTL GLAVNKEKKE DDI

Type	Start	End	Confidence
Cytoplasmic	1	92	0.96
Transmembrane Helix	93	112	0.96
Non-Cytoplasmic	113	131	0.94
Transmembrane Helix	132	153	0.89
Cytoplasmic	154	188	0.85
Transmembrane Helix	189	209	0.63
Non-Cytoplasmic	210	463	0.80